Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   LG401_RS05055 Genome accession   NZ_CP084711
Coordinates   1033236..1033814 (+) Length   192 a.a.
NCBI ID   WP_034663525.1    Uniprot ID   -
Organism   Bacillus pumilus strain AR03     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1028236..1038814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG401_RS18765 - 1028728..1029339 (-) 612 WP_404841025.1 methyl-accepting chemotaxis protein -
  LG401_RS18770 - 1029484..1030023 (-) 540 Protein_933 protoglobin family protein -
  LG401_RS05040 (LG401_05040) - 1030115..1031647 (-) 1533 WP_060595935.1 FAD-dependent oxidoreductase -
  LG401_RS05045 (LG401_05045) - 1031793..1032653 (+) 861 WP_060595936.1 SDR family oxidoreductase -
  LG401_RS05050 (LG401_05050) - 1032710..1032946 (-) 237 WP_060595937.1 IDEAL domain-containing protein -
  LG401_RS05055 (LG401_05055) comK 1033236..1033814 (+) 579 WP_034663525.1 competence protein ComK Regulator
  LG401_RS05060 (LG401_05060) - 1033983..1035089 (+) 1107 WP_106036673.1 D-TA family PLP-dependent enzyme -
  LG401_RS05065 (LG401_05065) - 1035444..1035926 (+) 483 WP_066031075.1 hypothetical protein -
  LG401_RS05070 (LG401_05070) - 1035959..1037398 (-) 1440 WP_106036674.1 PLP-dependent aminotransferase family protein -
  LG401_RS05075 (LG401_05075) - 1037544..1038713 (+) 1170 WP_106036675.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22363.36 Da        Isoelectric Point: 7.8904

>NTDB_id=612605 LG401_RS05055 WP_034663525.1 1033236..1033814(+) (comK) [Bacillus pumilus strain AR03]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVIFTNEQTVELDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=612605 LG401_RS05055 WP_034663525.1 1033236..1033814(+) (comK) [Bacillus pumilus strain AR03]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GTTGCAGATTCTTCGGCTCAAGCTATGCGGGCAGAAAAGCGGGAACATATGAAGTAACAGGAATATCTCACAAGCCTCCA
ATTGTGATTGACTCATCCAATCATTTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAGGAATCATCCCTCGGAGACACGGTGGTCATCTTTACAAATGAGCAAACCGTCGAACTCG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACAGAACAGCGTATCTCCGAACGAAATTTCAAGATCGCCTTGATGGA
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAACCTTGTATACGATTTTATATTAAGGGA
GCTTCGGAACAGATATTAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.979

100

0.62