Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LG401_RS04075 Genome accession   NZ_CP084711
Coordinates   846971..847762 (+) Length   263 a.a.
NCBI ID   WP_060595806.1    Uniprot ID   -
Organism   Bacillus pumilus strain AR03     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 841971..852762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG401_RS04040 (LG401_04040) - 842054..842602 (+) 549 WP_034665029.1 thioredoxin family protein -
  LG401_RS04045 (LG401_04045) - 842939..843406 (+) 468 WP_066031146.1 thiol-disulfide oxidoreductase DCC family protein -
  LG401_RS04050 (LG401_04050) - 843443..844699 (-) 1257 WP_066031145.1 transcriptional regulator -
  LG401_RS04055 (LG401_04055) - 844973..845560 (+) 588 WP_226509493.1 nitroreductase -
  LG401_RS04060 (LG401_04060) - 845600..845755 (-) 156 WP_034665021.1 YfhD family protein -
  LG401_RS04065 (LG401_04065) - 845817..845927 (-) 111 WP_017358836.1 YfhE family protein -
  LG401_RS04070 (LG401_04070) - 845980..846876 (-) 897 WP_060595805.1 TIGR01777 family oxidoreductase -
  LG401_RS04075 (LG401_04075) recX 846971..847762 (+) 792 WP_060595806.1 recombination regulator RecX Regulator
  LG401_RS04080 (LG401_04080) - 847766..848080 (+) 315 WP_216454369.1 YfhH family protein -
  LG401_RS04085 (LG401_04085) - 848213..848386 (-) 174 WP_003217811.1 YpzG family protein -
  LG401_RS04090 (LG401_04090) - 848412..848561 (-) 150 WP_003217849.1 small, acid-soluble spore protein K -
  LG401_RS04095 (LG401_04095) - 848678..848950 (+) 273 WP_034665009.1 YfhJ family protein -
  LG401_RS04100 (LG401_04100) - 849241..850224 (+) 984 WP_034665005.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30575.00 Da        Isoelectric Point: 6.6674

>NTDB_id=612601 LG401_RS04075 WP_060595806.1 846971..847762(+) (recX) [Bacillus pumilus strain AR03]
MPYITKISAQKNNTERVNIFLDEKYAFSVDLDVLVQHDLKKGKELDEADIIEIQFGDAVKKGFQQAVDYLSYRMRSVKEV
TDYLTKKEIPAPAISEIIHKLKHYKYVNDLEFAEAYVSTHRKTNSKGPSVLKKELKLKGIDDDTIEQALSQYPDDLQLEE
AVNQVLKLVRKEKNRSAKEIEQRIKLQLQRKGFSFAIIDKALQEAYDGQEEEKEEEALLYMLEKAKRKVGYDGSFEKKMK
VKQFLFRKGFDLDTIDHVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=612601 LG401_RS04075 WP_060595806.1 846971..847762(+) (recX) [Bacillus pumilus strain AR03]
ATGCCCTATATTACAAAAATCTCCGCTCAGAAAAACAATACAGAGCGGGTGAACATCTTTCTTGATGAAAAGTACGCCTT
TAGCGTTGATCTAGATGTGCTCGTCCAGCACGACTTAAAAAAAGGGAAAGAGCTGGACGAAGCAGATATCATTGAAATTC
AATTCGGTGATGCTGTGAAAAAAGGATTTCAGCAGGCCGTCGATTATTTATCCTACCGAATGAGATCGGTGAAAGAAGTG
ACCGATTATTTGACGAAAAAAGAAATTCCAGCGCCTGCTATTAGTGAAATTATACACAAATTAAAGCATTACAAGTATGT
AAATGATCTTGAATTTGCGGAAGCCTATGTAAGCACCCACCGTAAAACGAACAGCAAAGGGCCGTCCGTCCTGAAAAAAG
AGTTAAAGCTTAAAGGGATAGACGATGATACCATTGAACAAGCGCTATCGCAATATCCTGATGACTTACAGCTGGAGGAA
GCCGTCAATCAGGTTCTCAAGCTTGTGAGAAAAGAAAAGAATCGTTCTGCAAAAGAGATCGAGCAGCGCATCAAGCTTCA
GCTTCAGCGAAAGGGATTTTCGTTTGCGATCATTGATAAAGCCCTTCAAGAAGCCTATGATGGACAAGAAGAGGAAAAGG
AAGAAGAAGCCCTCCTCTATATGCTGGAGAAGGCAAAACGCAAGGTAGGATATGACGGATCATTTGAAAAGAAGATGAAA
GTGAAGCAGTTTTTATTCAGAAAAGGCTTTGATCTCGATACAATTGATCACGTTTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

63.118

100

0.631