Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LG401_RS01885 Genome accession   NZ_CP084711
Coordinates   345428..345856 (-) Length   142 a.a.
NCBI ID   WP_060595509.1    Uniprot ID   -
Organism   Bacillus pumilus strain AR03     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 340428..350856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG401_RS01855 (LG401_01855) - 340585..340914 (+) 330 WP_060595541.1 YckD family protein -
  LG401_RS01860 (LG401_01860) - 340964..341728 (-) 765 WP_226509336.1 MBL fold metallo-hydrolase -
  LG401_RS01865 (LG401_01865) - 341844..342260 (+) 417 WP_034664465.1 Lrp/AsnC family transcriptional regulator -
  LG401_RS01870 (LG401_01870) - 342289..343095 (+) 807 WP_066031346.1 aminoglycoside N(3)-acetyltransferase -
  LG401_RS01875 (LG401_01875) - 343097..343483 (-) 387 WP_106031574.1 competence protein ComJ -
  LG401_RS01880 (LG401_01880) - 343604..345301 (-) 1698 WP_226509337.1 methyl-accepting chemotaxis protein -
  LG401_RS01885 (LG401_01885) nucA/comI 345428..345856 (-) 429 WP_060595509.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LG401_RS01890 (LG401_01890) - 346224..348293 (+) 2070 WP_226509338.1 hydantoinase/oxoprolinase family protein -
  LG401_RS01895 (LG401_01895) - 348283..350268 (+) 1986 WP_226509339.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15916.82 Da        Isoelectric Point: 5.5444

>NTDB_id=612599 LG401_RS01885 WP_060595509.1 345428..345856(-) (nucA/comI) [Bacillus pumilus strain AR03]
MKLLKIILLLLLIVVGVTTGYIQLEQSKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSVCTIDRKHSDEQRDQS
LHGIPTKRGYDRDEWPMAMCKEGGTGASVKYISPSDNRGAGSWVGHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=612599 LG401_RS01885 WP_060595509.1 345428..345856(-) (nucA/comI) [Bacillus pumilus strain AR03]
ATGAAACTTCTTAAAATCATTCTCTTGCTTTTACTAATCGTCGTTGGTGTAACAACAGGCTATATTCAGCTGGAGCAAAG
TAAACAAGAGACGACGAATTCATCTTATGACAAAACCATTCACTTCCCATCAGATCGTTACCCAGAAACCGCGAAGCACA
TAGAAGAGGCAATTGATGAAGGCCATTCATCCGTATGTACGATTGACCGTAAACATAGCGATGAACAGAGAGACCAATCA
CTTCATGGCATCCCAACAAAGCGCGGGTATGATCGGGACGAATGGCCGATGGCGATGTGTAAGGAAGGAGGAACAGGAGC
TTCTGTCAAATATATCAGTCCTTCAGATAATAGGGGAGCAGGCTCATGGGTCGGTCATCAATTATCGGATGATCCTGACG
GCACAAGAATACAATTTATCATCGATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.116

85.211

0.563