NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	LGQ02_RS17735	Genome accession	NZ_CP084703
Coordinates	3665388..3665978 (+)	Length	196 a.a.
NCBI ID	WP_226515636.1	Uniprot ID	-
Organism	Bacillus shivajii strain JCM 32183
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3660388..3670978

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LGQ02_RS17715 (LGQ02_17715)	gap	3660912..3661919 (-)	1008	WP_226515632.1	type I glyceraldehyde-3-phosphate dehydrogenase	-
LGQ02_RS17720 (LGQ02_17720)	-	3662002..3663027 (-)	1026	WP_226515633.1	sugar-binding transcriptional regulator	-
LGQ02_RS17725 (LGQ02_17725)	-	3663206..3663454 (-)	249	WP_226515634.1	glutaredoxin family protein	-
LGQ02_RS17730 (LGQ02_17730)	rpoN	3663468..3664823 (-)	1356	WP_226515635.1	RNA polymerase factor sigma-54	-
LGQ02_RS17735 (LGQ02_17735)	clpP	3665388..3665978 (+)	591	WP_226515636.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
LGQ02_RS17740 (LGQ02_17740)	-	3666084..3666341 (-)	258	WP_226515637.1	HPr family phosphocarrier protein	-
LGQ02_RS17745 (LGQ02_17745)	whiA	3666434..3667375 (-)	942	WP_226515638.1	DNA-binding protein WhiA	-
LGQ02_RS17750 (LGQ02_17750)	yvcK	3667430..3668374 (-)	945	WP_226515639.1	YvcK family protein	-
LGQ02_RS17755 (LGQ02_17755)	rapZ	3668371..3669270 (-)	900	WP_226515640.1	RNase adapter RapZ	-
LGQ02_RS17760 (LGQ02_17760)	-	3669284..3669790 (-)	507	WP_319003489.1	8-oxo-dGTP diphosphatase	-

Sequence

Protein

Download Length: 196 a.a. Molecular weight: 21557.78 Da Isoelectric Point: 4.7527

                                >NTDB_id=612554 LGQ02_RS17735 WP_226515636.1 3665388..3665978(+) (clpP) [Bacillus shivajii strain JCM 32183]

MNLVPTVIEQTNRGERAYDIYSRLLKDRIIMLGTPIDDNVSNSIVAQLLFLAADDPDKDISLYINSPGGSITAGMAIYDT

MQFIKPKVQTICIGMAASMGAFLLAAGEPGKRFALPNSEVMIHQPLGGAQGQASDIEIHAKRIIEMREKLNKILSERTGQ

SLEVIARDTDRDNFMDAVEAQKYGLIDEVMDKKPNS

Nucleotide

Download Length: 591 bp

                                >NTDB_id=612554 LGQ02_RS17735 WP_226515636.1 3665388..3665978(+) (clpP) [Bacillus shivajii strain JCM 32183]

ATGAATTTAGTACCTACAGTTATTGAACAAACAAACCGCGGGGAACGTGCATATGATATTTATTCACGCTTACTTAAAGA

CCGCATTATTATGCTAGGAACGCCGATTGATGATAATGTTTCAAATTCGATCGTTGCTCAGCTACTATTCTTAGCAGCCG

ATGATCCAGATAAGGACATCTCATTATATATTAATAGTCCTGGAGGATCAATCACTGCAGGTATGGCCATTTATGATACG

ATGCAGTTTATTAAACCGAAAGTACAAACAATTTGTATCGGTATGGCTGCATCTATGGGTGCATTTTTACTTGCTGCTGG

TGAGCCAGGCAAACGCTTTGCTCTTCCAAACAGTGAAGTCATGATTCACCAACCACTTGGTGGTGCACAAGGGCAAGCTT

CTGATATTGAAATTCACGCAAAGCGCATTATTGAAATGCGCGAAAAACTAAACAAAATTTTATCTGAACGCACTGGTCAA

TCGCTTGAAGTCATTGCACGCGACACAGATCGTGACAACTTCATGGATGCCGTAGAAGCGCAAAAGTATGGCTTAATTGA

TGAAGTCATGGACAAAAAGCCGAATAGCTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	82.741	100	0.832
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	66.842	96.939	0.648
clpP	Lactococcus lactis subsp. cremoris KW2	60.209	97.449	0.587
clpP	Streptococcus mutans UA159	58.854	97.959	0.577
clpP	Streptococcus pneumoniae Rx1	58.421	96.939	0.566
clpP	Streptococcus pneumoniae D39	58.421	96.939	0.566
clpP	Streptococcus pneumoniae R6	58.421	96.939	0.566
clpP	Streptococcus pneumoniae TIGR4	58.421	96.939	0.566
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	58.115	97.449	0.566
clpP	Streptococcus thermophilus LMG 18311	57.895	96.939	0.561
clpP	Streptococcus thermophilus LMD-9	57.895	96.939	0.561
clpP	Streptococcus pyogenes JRS4	56.021	97.449	0.546
clpP	Streptococcus pyogenes MGAS315	56.021	97.449	0.546

Detailed information NTG0612554