Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LGQ02_RS08780 Genome accession   NZ_CP084703
Coordinates   1801642..1802250 (-) Length   202 a.a.
NCBI ID   WP_226517805.1    Uniprot ID   -
Organism   Bacillus shivajii strain JCM 32183     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1796642..1807250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGQ02_RS08760 (LGQ02_08760) - 1797045..1797767 (+) 723 WP_226517801.1 DnaD domain-containing protein -
  LGQ02_RS08765 (LGQ02_08765) nth 1797781..1798440 (+) 660 WP_226517802.1 endonuclease III -
  LGQ02_RS08770 (LGQ02_08770) - 1798437..1798955 (+) 519 WP_226517803.1 YpoC family protein -
  LGQ02_RS08775 (LGQ02_08775) - 1798996..1801602 (-) 2607 WP_226517804.1 transglycosylase domain-containing protein -
  LGQ02_RS08780 (LGQ02_08780) recU 1801642..1802250 (-) 609 WP_226517805.1 Holliday junction resolvase RecU Machinery gene
  LGQ02_RS08785 (LGQ02_08785) - 1802374..1803330 (+) 957 WP_226517806.1 DUF2515 family protein -
  LGQ02_RS21265 - 1803374..1803496 (-) 123 WP_264184009.1 hypothetical protein -
  LGQ02_RS08790 (LGQ02_08790) - 1803681..1804208 (+) 528 WP_226517807.1 MerR family transcriptional regulator -
  LGQ02_RS08795 (LGQ02_08795) - 1804265..1804633 (+) 369 WP_226517808.1 YppE family protein -
  LGQ02_RS08800 (LGQ02_08800) - 1805633..1806085 (+) 453 WP_226517809.1 TcaA NTF2-like domain-containing protein -
  LGQ02_RS08805 (LGQ02_08805) - 1806082..1806699 (-) 618 WP_226517810.1 trimeric intracellular cation channel family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23759.28 Da        Isoelectric Point: 10.0983

>NTDB_id=612541 LGQ02_RS08780 WP_226517805.1 1801642..1802250(-) (recU) [Bacillus shivajii strain JCM 32183]
MTVRYPNGKKYTKDATFSPKKNVKKDERFSNRGMTLEEDLNETNEYYRSRNIALIHKKPTPLQIVNVHYPKRSAAVVTEA
YFKKPSTTDYNGVYKGKYIDFEAKETKNKTSFPLKNFHDHQIDHMRQVIEQNGITFAILRFSVTDEIYLMFAQDIIPYFQ
EKDKKRKSIPKNDIESKGYKVPLGLHPRIDYLKIIDKIISNV

Nucleotide


Download         Length: 609 bp        

>NTDB_id=612541 LGQ02_RS08780 WP_226517805.1 1801642..1802250(-) (recU) [Bacillus shivajii strain JCM 32183]
ATGACTGTAAGGTATCCTAACGGAAAAAAGTATACAAAAGATGCAACCTTTTCACCTAAAAAAAACGTCAAAAAAGATGA
GCGTTTTAGTAACCGAGGGATGACACTCGAAGAAGACTTAAATGAGACAAATGAATATTATAGGTCCCGTAACATCGCAC
TCATTCATAAAAAACCCACTCCACTTCAAATTGTGAATGTTCATTATCCGAAGCGAAGCGCTGCTGTTGTTACGGAAGCA
TACTTTAAAAAACCATCAACAACTGACTATAATGGTGTTTATAAAGGCAAATATATCGATTTTGAAGCAAAAGAAACCAA
AAATAAAACAAGCTTCCCATTAAAAAACTTTCACGATCACCAAATTGATCATATGCGCCAAGTCATTGAACAAAACGGAA
TTACTTTTGCTATTTTACGCTTCAGCGTTACAGATGAAATATATCTTATGTTTGCCCAAGACATCATCCCTTATTTTCAA
GAGAAAGACAAAAAGAGAAAATCCATTCCGAAAAATGATATTGAGTCAAAAGGATATAAAGTTCCATTAGGTCTTCATCC
TAGAATTGACTATTTAAAAATCATTGATAAAATCATTTCTAATGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(32-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

59.391

97.525

0.579