Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LGQ02_RS07025 Genome accession   NZ_CP084703
Coordinates   1450098..1450853 (+) Length   251 a.a.
NCBI ID   WP_226517493.1    Uniprot ID   -
Organism   Bacillus shivajii strain JCM 32183     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1445098..1455853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGQ02_RS06995 (LGQ02_06995) ybeY 1446667..1447077 (+) 411 WP_226518243.1 rRNA maturation RNase YbeY -
  LGQ02_RS07000 (LGQ02_07000) - 1447061..1447450 (+) 390 WP_226517488.1 diacylglycerol kinase family protein -
  LGQ02_RS07005 (LGQ02_07005) - 1447544..1448335 (+) 792 WP_226517489.1 DUF502 domain-containing protein -
  LGQ02_RS07010 (LGQ02_07010) - 1448310..1448708 (+) 399 WP_226517490.1 cytidine deaminase -
  LGQ02_RS07015 (LGQ02_07015) era 1448716..1449609 (+) 894 WP_226517491.1 GTPase Era -
  LGQ02_RS07020 (LGQ02_07020) - 1449917..1450063 (+) 147 WP_226517492.1 YqzL family protein -
  LGQ02_RS07025 (LGQ02_07025) recO 1450098..1450853 (+) 756 WP_226517493.1 DNA repair protein RecO Machinery gene
  LGQ02_RS07030 (LGQ02_07030) glyQ 1451174..1452064 (+) 891 WP_226517494.1 glycine--tRNA ligase subunit alpha -
  LGQ02_RS07035 (LGQ02_07035) glyS 1452057..1454147 (+) 2091 WP_226517495.1 glycine--tRNA ligase subunit beta -
  LGQ02_RS07040 (LGQ02_07040) - 1454338..1454955 (+) 618 WP_319003534.1 helix-turn-helix transcriptional regulator -
  LGQ02_RS07045 (LGQ02_07045) - 1454999..1455817 (+) 819 WP_226517497.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29012.40 Da        Isoelectric Point: 8.1370

>NTDB_id=612538 LGQ02_RS07025 WP_226517493.1 1450098..1450853(+) (recO) [Bacillus shivajii strain JCM 32183]
MLHKVEGIIIRTNDYGETNKILTVFTRENGKVALMARGAKRPKSRFASSAQLFMYGMFVYQRSSGIGTLNQADITDSFKD
VRIDLKLTSHAAYIAEMADKLTEDHQRNPYLFELIYQLFVYLNDGVDEDILTRIFETKMLEVAGVTPNLFHCALCGRQED
HFVFSVRQGGILCSSCKHEDSYHMKVTPSVIKLLRLFQQFDIKRLGNVSVKKETKRQLKEVLHLYFDEYVGVRLKSKRFL
DQIDSLYDEES

Nucleotide


Download         Length: 756 bp        

>NTDB_id=612538 LGQ02_RS07025 WP_226517493.1 1450098..1450853(+) (recO) [Bacillus shivajii strain JCM 32183]
TTGCTTCATAAAGTAGAAGGGATTATTATTAGAACGAATGATTATGGCGAAACAAATAAAATATTAACTGTATTTACTCG
TGAAAATGGAAAAGTTGCACTGATGGCACGAGGAGCAAAGCGCCCTAAAAGTCGCTTTGCTTCAAGTGCTCAATTATTTA
TGTATGGAATGTTCGTTTATCAACGATCATCTGGTATCGGGACACTGAATCAGGCAGATATCACCGATTCTTTTAAAGAT
GTTCGAATCGATCTGAAGTTAACCTCTCATGCCGCTTACATAGCTGAAATGGCAGATAAGTTAACTGAGGACCATCAACG
AAATCCGTATTTGTTTGAACTCATTTATCAATTGTTTGTATATTTAAATGATGGTGTGGATGAAGATATTTTAACGAGAA
TTTTCGAAACGAAAATGCTTGAAGTAGCTGGTGTAACACCAAATTTATTTCATTGTGCATTATGCGGTAGGCAAGAGGAT
CATTTTGTCTTTTCTGTAAGGCAAGGTGGGATACTATGTAGCAGTTGTAAGCATGAAGATTCTTATCACATGAAAGTAAC
ACCTTCTGTAATTAAATTGTTACGTCTTTTTCAGCAATTTGATATAAAGCGTTTAGGGAATGTTTCTGTTAAGAAAGAGA
CAAAAAGGCAACTGAAGGAAGTATTGCACTTATATTTTGATGAGTATGTTGGCGTAAGGTTAAAGTCAAAGCGCTTTTTA
GACCAAATTGATTCTTTGTATGATGAAGAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

52.439

98.008

0.514