Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LGQ02_RS00265 Genome accession   NZ_CP084703
Coordinates   60268..60555 (-) Length   95 a.a.
NCBI ID   WP_226516297.1    Uniprot ID   -
Organism   Bacillus shivajii strain JCM 32183     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 55268..65555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGQ02_RS00230 (LGQ02_00230) - 55558..55887 (+) 330 WP_226516290.1 cyclic-di-AMP receptor -
  LGQ02_RS00235 (LGQ02_00235) holB 55921..56907 (+) 987 WP_226516291.1 DNA polymerase III subunit delta' -
  LGQ02_RS00240 (LGQ02_00240) - 56909..57736 (+) 828 WP_226516292.1 stage 0 sporulation family protein -
  LGQ02_RS00245 (LGQ02_00245) yabA 57752..58156 (+) 405 WP_226516293.1 DNA replication initiation control protein YabA -
  LGQ02_RS00250 (LGQ02_00250) - 58352..59086 (+) 735 WP_226516294.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LGQ02_RS00255 (LGQ02_00255) - 59073..59360 (+) 288 WP_226516295.1 GIY-YIG nuclease family protein -
  LGQ02_RS00260 (LGQ02_00260) rsmI 59338..60222 (+) 885 WP_226516296.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LGQ02_RS00265 (LGQ02_00265) abrB 60268..60555 (-) 288 WP_226516297.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LGQ02_RS00270 (LGQ02_00270) metG 61447..63447 (+) 2001 WP_226516298.1 methionine--tRNA ligase -
  LGQ02_RS00275 (LGQ02_00275) - 63925..64692 (+) 768 WP_226516299.1 TatD family hydrolase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10690.37 Da        Isoelectric Point: 4.9225

>NTDB_id=612528 LGQ02_RS00265 WP_226516297.1 60268..60555(-) (abrB) [Bacillus shivajii strain JCM 32183]
MKSTGIVRKVDELGRVVIPIELRRTLDIAEKDALEIYVDDDRIVLKKYKPNMTCQVTGEVSDDNLSIADGKIILSPNGAK
EIVKELESYISKQEK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=612528 LGQ02_RS00265 WP_226516297.1 60268..60555(-) (abrB) [Bacillus shivajii strain JCM 32183]
ATGAAATCTACTGGGATTGTACGTAAAGTTGACGAATTAGGACGTGTTGTTATACCAATCGAACTACGTCGTACATTAGA
TATTGCAGAAAAAGACGCTCTTGAAATTTATGTCGATGACGACCGAATTGTACTTAAAAAATATAAACCAAACATGACTT
GTCAAGTAACTGGGGAAGTTTCTGATGACAACTTGTCAATTGCTGATGGTAAAATTATTTTAAGTCCTAATGGTGCAAAA
GAAATTGTCAAAGAACTTGAGAGCTACATCTCAAAACAAGAGAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

76.923

95.789

0.737