Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   LGQ02_RS00020 Genome accession   NZ_CP084703
Coordinates   3319..4440 (+) Length   373 a.a.
NCBI ID   WP_226516257.1    Uniprot ID   -
Organism   Bacillus shivajii strain JCM 32183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGQ02_RS00010 (LGQ02_00010) dnaN 1241..2383 (+) 1143 WP_226516255.1 DNA polymerase III subunit beta -
  LGQ02_RS00015 (LGQ02_00015) yaaA 3083..3304 (+) 222 WP_226516256.1 S4 domain-containing protein YaaA -
  LGQ02_RS00020 (LGQ02_00020) recF 3319..4440 (+) 1122 WP_226516257.1 DNA replication/repair protein RecF Machinery gene
  LGQ02_RS00025 (LGQ02_00025) remB 4451..4711 (+) 261 WP_226516258.1 extracellular matrix regulator RemB -
  LGQ02_RS00030 (LGQ02_00030) gyrB 4799..6712 (+) 1914 WP_226516259.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LGQ02_RS00035 (LGQ02_00035) gyrA 6895..9429 (+) 2535 WP_226516260.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 43455.91 Da        Isoelectric Point: 8.0103

>NTDB_id=612526 LGQ02_RS00020 WP_226516257.1 3319..4440(+) (recF) [Bacillus shivajii strain JCM 32183]
MHIDELTVRDYRNYEKVNLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSRDKELIRWDQPFAKVEGHLTNRNGP
LQMEVVFSNKGKKVKLNQLEKKRLSDYIGTCNIVMFAPEDLNLVKGSPQVRRRFLDMEMGQIHSVYLYYLSQYHKVLKQR
NQWLKDVQQKKLEFNDTMLSVMTEQLIQSAVQVLVKRYAFIDKLQTWAEDIHRDISRGKEKLQIQYVPSCHVSEDMDLST
MVKTLEEVFHKKKDQEIQRGTTLVGPHRDDIQFLVNDRDIQMFGSQGQQRTTALSLKLAEIELIHEKIGEFPILLLDDVL
SELDDHRQSHLLNTIQGKVQTFVTTTSVDGINHQTLREANMYVVNDGKVEIKK

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=612526 LGQ02_RS00020 WP_226516257.1 3319..4440(+) (recF) [Bacillus shivajii strain JCM 32183]
TTGCATATTGACGAGTTAACAGTAAGAGATTATCGCAATTATGAAAAAGTGAATTTACAATTTGAAAATAAAGTCAATGT
GATTATCGGTGAAAATGCCCAAGGAAAAACGAATTTGATGGAAGCGATCTATGTTTTAGCGATGGCAAAATCACATCGGA
CATCAAGAGATAAAGAATTAATTCGCTGGGATCAACCGTTTGCCAAGGTGGAAGGTCACTTAACGAATCGAAATGGACCA
CTTCAAATGGAAGTGGTATTTTCTAATAAAGGGAAGAAGGTCAAACTTAATCAATTAGAAAAAAAGAGGTTAAGTGATTA
TATCGGAACGTGCAATATCGTCATGTTTGCTCCAGAGGACCTCAACCTCGTAAAAGGTAGTCCTCAAGTACGCAGGCGAT
TTTTGGACATGGAAATGGGACAAATCCATTCTGTTTACTTGTATTACCTCTCCCAATACCACAAAGTATTAAAGCAGAGA
AATCAATGGTTGAAAGATGTTCAACAGAAAAAACTCGAATTTAACGACACAATGCTTTCGGTTATGACAGAACAGCTCAT
CCAGTCTGCAGTACAAGTGCTTGTTAAGAGGTATGCATTTATTGATAAACTACAAACTTGGGCTGAAGACATTCATCGAG
ATATAAGTCGAGGGAAAGAAAAACTTCAGATTCAATATGTTCCTTCATGTCACGTATCAGAAGATATGGATTTGTCGACA
ATGGTAAAGACATTAGAAGAAGTATTTCATAAGAAAAAAGATCAGGAAATTCAACGAGGAACAACACTCGTTGGACCGCA
TCGAGATGACATCCAATTTTTAGTGAATGATCGTGATATCCAAATGTTTGGTTCACAAGGTCAGCAACGTACAACAGCAC
TGTCTTTAAAGTTGGCAGAGATCGAGTTAATTCATGAAAAAATTGGGGAGTTTCCGATTCTTTTATTAGATGATGTACTA
TCGGAGCTAGATGATCACCGTCAGTCTCATTTACTGAATACGATTCAAGGGAAAGTCCAAACATTCGTAACAACAACAAG
TGTTGACGGTATTAACCATCAAACATTACGTGAAGCCAATATGTATGTGGTAAATGACGGAAAAGTTGAAATAAAAAAGT
GA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

63.415

98.928

0.627