Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J3U91_RS01460 Genome accession   NZ_CP084701
Coordinates   285515..286927 (+) Length   470 a.a.
NCBI ID   WP_002817898.1    Uniprot ID   A0A483B8S8
Organism   Oenococcus oeni strain AWRIB429     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 280515..291927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3U91_RS01420 (J3U91_00292) - 281022..281690 (+) 669 WP_002818134.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  J3U91_RS01425 (J3U91_00293) - 281865..282143 (+) 279 WP_002817904.1 hypothetical protein -
  J3U91_RS01430 (J3U91_00294) - 282149..282754 (+) 606 WP_002818135.1 DNA-3-methyladenine glycosylase I -
  J3U91_RS01435 (J3U91_00295) - 282758..283801 (-) 1044 WP_002818136.1 AI-2E family transporter -
  J3U91_RS01440 (J3U91_00296) - 283892..284185 (-) 294 WP_002818137.1 GNAT family N-acetyltransferase -
  J3U91_RS01445 (J3U91_00297) - 284289..284480 (+) 192 WP_002818138.1 hypothetical protein -
  J3U91_RS01450 (J3U91_00298) - 284554..285009 (+) 456 WP_002818139.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  J3U91_RS01455 (J3U91_00299) - 285009..285479 (+) 471 WP_002818140.1 NUDIX hydrolase -
  J3U91_RS01460 (J3U91_00300) radA 285515..286927 (+) 1413 WP_002817898.1 DNA repair protein RadA Machinery gene
  J3U91_RS01465 (J3U91_00301) pgmB 286946..287617 (+) 672 WP_002818141.1 beta-phosphoglucomutase -
  J3U91_RS01470 (J3U91_00302) rdgB 287713..288327 (+) 615 WP_002818142.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  J3U91_RS01475 (J3U91_00303) gltX 288350..289846 (+) 1497 WP_002818144.1 glutamate--tRNA ligase -
  J3U91_RS01480 (J3U91_00304) - 289968..290786 (+) 819 WP_002817894.1 phosphoribosyltransferase -
  J3U91_RS01485 (J3U91_00305) - 290827..291384 (+) 558 WP_002818145.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 50699.13 Da        Isoelectric Point: 6.5132

>NTDB_id=612515 J3U91_RS01460 WP_002817898.1 285515..286927(+) (radA) [Oenococcus oeni strain AWRIB429]
MAKAKTQFVCSNCGYTSARYLGRCPNCGQWNTLIEEKIVPEAVVNRKARISFDGRVAKPKKISEISGNELPRTRTGLREL
NRVLGGGIVPGSLILIGGDPGIGKSTLMLQVSGQLAENGGSVLYVSGEESDNQIKLRADRLGVGSDSFIVYPETDMEQIK
SIVQQIEPDYLVIDSVQTMQEPDLQSPIGSVAQIREVTADLMQIAKTNAITVFIVGHVTKDGSIAGPKILEHMVDTVLYF
EGDANYKYRILRTVKNRFGSTNELGIFEMRDHGLREVANPSEIFLEERLAGATGSAITASMEGSRPILVEVQALVAPTVF
GNAQRVTTGVDRNRVAQILAVLEKHANLLLQNQDAHVRITGGVKIDEPAADLAIALAVASSYHEKATNASDVFLGEVGLG
GEVRSISLIEDRLKEIAKLGFKRAIVSKNNLAGIDLPKGLQVIGVSTLEEALKLGLDLNRASKQKGFADL

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=612515 J3U91_RS01460 WP_002817898.1 285515..286927(+) (radA) [Oenococcus oeni strain AWRIB429]
ATGGCAAAAGCAAAAACACAATTTGTTTGTTCCAACTGTGGCTATACCAGTGCTCGCTATCTTGGGCGCTGTCCGAATTG
CGGCCAATGGAATACATTAATAGAGGAAAAAATTGTTCCCGAAGCAGTTGTAAACCGAAAAGCTCGAATCAGTTTCGACG
GGCGGGTTGCCAAACCGAAAAAGATTTCTGAAATCTCCGGTAATGAATTACCTAGAACAAGGACTGGATTAAGGGAATTA
AATCGCGTCCTTGGCGGTGGGATCGTCCCGGGAAGCTTAATTTTGATTGGCGGCGATCCAGGAATCGGGAAATCGACTTT
AATGCTTCAGGTTTCTGGTCAGTTGGCCGAAAATGGCGGAAGTGTTCTTTATGTTTCCGGAGAAGAGTCGGATAATCAGA
TTAAATTGCGTGCTGATCGACTTGGAGTTGGTTCGGATTCTTTTATTGTTTATCCGGAAACGGATATGGAACAAATTAAA
TCAATTGTCCAACAGATCGAACCGGATTATTTGGTAATTGATTCGGTTCAGACGATGCAGGAACCTGATCTGCAGTCGCC
AATTGGCTCGGTTGCCCAAATACGAGAAGTGACGGCCGACTTAATGCAGATCGCCAAAACGAATGCAATTACGGTTTTCA
TTGTCGGGCATGTTACTAAAGATGGATCGATCGCCGGTCCGAAAATTCTCGAGCACATGGTTGATACGGTTCTGTATTTT
GAAGGGGATGCCAATTACAAGTACCGGATCCTCCGAACTGTTAAAAATCGTTTTGGATCGACCAATGAACTTGGTATCTT
TGAAATGCGTGATCATGGTTTACGAGAAGTAGCCAATCCTTCGGAGATCTTTCTCGAAGAGCGTTTGGCCGGCGCAACCG
GATCGGCAATTACAGCCAGTATGGAGGGCAGTCGTCCGATTTTAGTCGAAGTGCAGGCTTTGGTCGCACCAACGGTTTTC
GGTAACGCTCAGCGTGTGACAACCGGCGTTGATCGAAATCGCGTTGCTCAGATTTTAGCCGTTTTGGAAAAACATGCCAA
TCTGCTTTTACAAAATCAGGATGCCCATGTTCGAATTACCGGAGGCGTTAAAATCGACGAGCCGGCAGCTGATTTGGCAA
TTGCTTTAGCCGTTGCCAGTTCTTACCATGAAAAAGCAACTAATGCTTCCGATGTTTTTCTTGGTGAAGTAGGTTTGGGA
GGAGAAGTCCGTTCAATTTCTCTGATTGAGGATCGTTTGAAAGAGATTGCCAAGCTTGGATTTAAACGGGCAATTGTTTC
AAAAAATAATTTGGCAGGAATCGATTTGCCAAAAGGTCTGCAGGTGATTGGTGTTTCTACTTTGGAAGAAGCATTGAAAT
TAGGCCTTGATTTGAATAGGGCTTCCAAACAGAAAGGTTTTGCTGATTTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(367-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(76-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A483B8S8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

61.589

96.383

0.594
  radA Streptococcus pneumoniae Rx1

61.589

96.383

0.594
  radA Streptococcus pneumoniae D39

61.589

96.383

0.594
  radA Streptococcus pneumoniae TIGR4

61.589

96.383

0.594
  radA Bacillus subtilis subsp. subtilis str. 168

60.832

97.234

0.591
  radA Streptococcus mitis NCTC 12261

61.369

96.383

0.591
  radA Streptococcus mitis SK321

61.148

96.383

0.589