Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   LDB25_RS16580 Genome accession   NZ_CP084695
Coordinates   3274303..3274443 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain DJB5     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3269303..3279443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDB25_RS16555 (LDB25_16480) - 3269617..3270000 (-) 384 WP_014418761.1 hotdog fold thioesterase -
  LDB25_RS16560 (LDB25_16485) comA 3270022..3270666 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  LDB25_RS16565 (LDB25_16490) comP 3270747..3273098 (-) 2352 WP_269800792.1 sensor histidine kinase Regulator
  LDB25_RS16570 (LDB25_16495) comX 3273076..3273246 (-) 171 WP_032863917.1 competence pheromone ComX -
  LDB25_RS16575 (LDB25_16500) - 3273246..3274151 (-) 906 WP_014418764.1 polyprenyl synthetase family protein -
  LDB25_RS16580 (LDB25_16505) degQ 3274303..3274443 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  LDB25_RS16585 (LDB25_16510) - 3274909..3275250 (+) 342 WP_014418765.1 hypothetical protein -
  LDB25_RS16590 (LDB25_16515) - 3275257..3276480 (-) 1224 WP_014418766.1 EAL and HDOD domain-containing protein -
  LDB25_RS16595 (LDB25_16520) - 3276610..3278076 (-) 1467 WP_014418767.1 nicotinate phosphoribosyltransferase -
  LDB25_RS16600 (LDB25_16525) - 3278094..3278645 (-) 552 WP_003152033.1 cysteine hydrolase family protein -
  LDB25_RS16605 (LDB25_16530) - 3278742..3279140 (-) 399 WP_003152031.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=612491 LDB25_RS16580 WP_003152043.1 3274303..3274443(-) (degQ) [Bacillus velezensis strain DJB5]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=612491 LDB25_RS16580 WP_003152043.1 3274303..3274443(-) (degQ) [Bacillus velezensis strain DJB5]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891