Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LDB25_RS11935 Genome accession   NZ_CP084695
Coordinates   2379477..2380085 (+) Length   202 a.a.
NCBI ID   WP_014418235.1    Uniprot ID   -
Organism   Bacillus velezensis strain DJB5     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2374477..2385085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDB25_RS11895 (LDB25_11860) - 2375497..2376003 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  LDB25_RS11900 (LDB25_11865) - 2376142..2376555 (+) 414 WP_007612169.1 Hsp20/alpha crystallin family protein -
  LDB25_RS11905 (LDB25_11870) - 2376585..2377052 (-) 468 WP_014418231.1 YppG family protein -
  LDB25_RS11910 (LDB25_11875) - 2377239..2377421 (+) 183 WP_003153532.1 YppF family protein -
  LDB25_RS11915 (LDB25_11880) - 2377460..2377828 (-) 369 WP_014418232.1 YppE family protein -
  LDB25_RS11920 (LDB25_11885) - 2377874..2378119 (-) 246 WP_014418233.1 DUF5446 family protein -
  LDB25_RS11925 (LDB25_11890) sspM 2378325..2378429 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  LDB25_RS11930 (LDB25_11895) - 2378473..2379435 (-) 963 WP_014418234.1 DUF2515 domain-containing protein -
  LDB25_RS11935 (LDB25_11900) recU 2379477..2380085 (+) 609 WP_014418235.1 Holliday junction resolvase RecU Machinery gene
  LDB25_RS11940 (LDB25_11905) - 2380124..2382913 (+) 2790 WP_014418236.1 PBP1A family penicillin-binding protein -
  LDB25_RS11945 (LDB25_11910) - 2382991..2383482 (-) 492 WP_012117839.1 YpoC family protein -
  LDB25_RS11950 (LDB25_11915) nth 2383479..2384138 (-) 660 WP_007612187.1 endonuclease III -
  LDB25_RS11955 (LDB25_11920) dnaD 2384157..2384855 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=612466 LDB25_RS11935 WP_014418235.1 2379477..2380085(+) (recU) [Bacillus velezensis strain DJB5]
MIRYPNGKTFQPNKTVSSQNSQKRTHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=612466 LDB25_RS11935 WP_014418235.1 2379477..2380085(+) (recU) [Bacillus velezensis strain DJB5]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGACCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AAGAACGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

91.457

98.515

0.901