Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   LDB25_RS07675 Genome accession   NZ_CP084695
Coordinates   1494966..1496102 (-) Length   378 a.a.
NCBI ID   WP_014417673.1    Uniprot ID   -
Organism   Bacillus velezensis strain DJB5     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1482821..1528968 1494966..1496102 within 0


Gene organization within MGE regions


Location: 1482821..1528968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDB25_RS07580 (LDB25_07565) - 1482821..1484149 (+) 1329 WP_014417660.1 PhoH family protein -
  LDB25_RS07585 (LDB25_07570) - 1484144..1484620 (-) 477 WP_007409680.1 hypothetical protein -
  LDB25_RS07590 (LDB25_07575) - 1484724..1485011 (+) 288 Protein_1437 glutaminase -
  LDB25_RS07595 (LDB25_07580) - 1485627..1485929 (+) 303 WP_041481750.1 hypothetical protein -
  LDB25_RS07600 (LDB25_07585) - 1486079..1486321 (-) 243 WP_041481751.1 hypothetical protein -
  LDB25_RS07605 (LDB25_07590) - 1486431..1487093 (+) 663 WP_014417662.1 hypothetical protein -
  LDB25_RS07610 (LDB25_07595) - 1488276..1488689 (-) 414 WP_041481752.1 hypothetical protein -
  LDB25_RS07615 (LDB25_07600) - 1488888..1489232 (-) 345 WP_014417663.1 hypothetical protein -
  LDB25_RS07620 (LDB25_07605) - 1489263..1489418 (-) 156 WP_014417664.1 hypothetical protein -
  LDB25_RS07625 (LDB25_07610) - 1489408..1489773 (-) 366 WP_041481753.1 hypothetical protein -
  LDB25_RS07630 (LDB25_07615) - 1489921..1490322 (-) 402 WP_014417666.1 hypothetical protein -
  LDB25_RS07635 (LDB25_07620) - 1490502..1490720 (+) 219 WP_014417667.1 helix-turn-helix domain-containing protein -
  LDB25_RS07640 (LDB25_07625) - 1490768..1491049 (+) 282 WP_014417668.1 hypothetical protein -
  LDB25_RS07645 (LDB25_07630) - 1491102..1491347 (-) 246 WP_041481754.1 helix-turn-helix domain-containing protein -
  LDB25_RS07650 (LDB25_07635) - 1491848..1492564 (+) 717 WP_014721121.1 hypothetical protein -
  LDB25_RS07655 (LDB25_07640) - 1492600..1492908 (-) 309 WP_014417670.1 hypothetical protein -
  LDB25_RS07660 (LDB25_07645) - 1492921..1494345 (-) 1425 WP_014417671.1 lipase -
  LDB25_RS07665 (LDB25_07650) - 1494395..1494760 (+) 366 WP_014417672.1 DUF1433 domain-containing protein -
  LDB25_RS07670 (LDB25_07655) - 1494803..1494976 (-) 174 WP_169061491.1 hypothetical protein -
  LDB25_RS07675 (LDB25_07660) rapC 1494966..1496102 (-) 1137 WP_014417673.1 RapH N-terminal domain-containing protein Regulator
  LDB25_RS07680 (LDB25_07665) - 1496283..1497113 (-) 831 WP_014417674.1 SHOCT domain-containing protein -
  LDB25_RS07685 (LDB25_07670) - 1497278..1498168 (-) 891 WP_014417675.1 SH3 domain-containing protein -
  LDB25_RS07690 (LDB25_07675) - 1498256..1500874 (-) 2619 WP_014417676.1 phage tail protein -
  LDB25_RS07695 (LDB25_07680) - 1500947..1507777 (-) 6831 WP_014417677.1 phage tail tape measure protein -
  LDB25_RS07700 (LDB25_07685) - 1508522..1509655 (-) 1134 WP_014417678.1 GIY-YIG nuclease family protein -
  LDB25_RS07705 (LDB25_07690) - 1509830..1510708 (+) 879 WP_014417679.1 tyrosine-type recombinase/integrase -
  LDB25_RS07710 (LDB25_07695) - 1510794..1512287 (+) 1494 WP_014417680.1 hypothetical protein -
  LDB25_RS07715 (LDB25_07700) - 1512395..1512562 (-) 168 WP_014417681.1 hypothetical protein -
  LDB25_RS07720 (LDB25_07705) - 1512834..1513499 (+) 666 WP_014417682.1 hypothetical protein -
  LDB25_RS07725 (LDB25_07710) - 1513512..1514000 (-) 489 WP_014417683.1 hypothetical protein -
  LDB25_RS07730 (LDB25_07715) - 1513997..1514155 (-) 159 WP_014417684.1 XkdX family protein -
  LDB25_RS07735 (LDB25_07720) - 1514156..1514425 (-) 270 WP_014721129.1 hypothetical protein -
  LDB25_RS07740 (LDB25_07725) - 1514440..1515747 (-) 1308 WP_014417685.1 hypothetical protein -
  LDB25_RS07745 (LDB25_07730) - 1515786..1516355 (-) 570 WP_014417686.1 HNH endonuclease -
  LDB25_RS07750 (LDB25_07735) - 1516366..1516560 (-) 195 WP_014471790.1 hypothetical protein -
  LDB25_RS07755 (LDB25_07740) - 1517177..1520023 (-) 2847 WP_228370358.1 hypothetical protein -
  LDB25_RS07760 (LDB25_07745) - 1520041..1521945 (-) 1905 WP_014417688.1 hypothetical protein -
  LDB25_RS07765 (LDB25_07750) - 1522260..1523222 (+) 963 WP_014417689.1 AimR family lysis-lysogeny pheromone receptor -
  LDB25_RS07770 (LDB25_07755) - 1523266..1523388 (+) 123 WP_134998052.1 lysogeny pheromone AimP family peptide -
  LDB25_RS07775 (LDB25_07760) - 1523865..1524746 (+) 882 WP_014417690.1 hypothetical protein -
  LDB25_RS07780 (LDB25_07765) - 1524764..1525264 (+) 501 WP_014417691.1 hypothetical protein -
  LDB25_RS07785 (LDB25_07770) - 1525292..1526137 (+) 846 WP_014417692.1 hypothetical protein -
  LDB25_RS07790 (LDB25_07775) - 1526344..1526706 (+) 363 WP_041481756.1 hypothetical protein -
  LDB25_RS07795 (LDB25_07780) - 1526730..1526990 (+) 261 WP_228370359.1 hypothetical protein -
  LDB25_RS07800 (LDB25_07785) - 1527259..1528968 (+) 1710 WP_014417694.1 recombinase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44714.10 Da        Isoelectric Point: 4.8741

>NTDB_id=612461 LDB25_RS07675 WP_014417673.1 1494966..1496102(-) (rapC) [Bacillus velezensis strain DJB5]
MKQLISSSKVGVKINEWYKYIRMFSVPDAEVLKSEVEQEINAMEENQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPEIS
DLLEKIESSQAKLKGILEYYFNFFRGMYEFEEYEYLKAISFYKQAEKKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIESYRAHETYSVREIQCSFVIGLNYLDMEYPEKAIPHFQKAYKKALEIDMPRLAGSALYNLGISSFSEEKFDEAI
EYFKEGVLVYEQNGYEHANRLLDILFMLAKTNFKVNKKTEGTAVYNHGLSLAKNLNDEVLTKMFDFLNALYIDDNKEMLN
EILTYLEFKTMFSDVEDLATDAAKYYTKNEDHKAAGLFYEKVLYAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=612461 LDB25_RS07675 WP_014417673.1 1494966..1496102(-) (rapC) [Bacillus velezensis strain DJB5]
TTGAAACAGTTAATCTCCTCATCCAAAGTCGGCGTGAAGATTAATGAGTGGTACAAGTATATTCGCATGTTTAGTGTTCC
TGATGCAGAGGTGCTGAAATCAGAAGTGGAACAAGAAATAAACGCTATGGAAGAAAATCAGGATTTATTGTTGTACTATT
CCCTCATGTGTTTTAGACATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACGACCTGAGATTTCA
GACTTATTAGAAAAGATCGAAAGTAGCCAAGCTAAATTGAAAGGAATTCTTGAATATTACTTTAACTTTTTCCGTGGGAT
GTATGAATTTGAAGAATACGAATATCTTAAAGCGATAAGTTTTTACAAACAAGCGGAAAAGAAGTTGTCACTTGTAGCCG
ACGAAATTGAGCGAGCGGAGTTTCATTACAAAGTCGCTGAAATTTATTATCACATGAAACAAACACACATGTCGATGCAC
CATATTGTTCAAGCAATCGAAAGCTACAGAGCGCATGAAACCTATTCTGTTAGAGAAATTCAATGTTCTTTTGTTATTGG
TCTAAATTATTTAGATATGGAGTACCCAGAAAAGGCTATCCCTCATTTTCAAAAAGCTTATAAAAAAGCACTTGAAATTG
ATATGCCAAGATTAGCCGGATCCGCTCTATATAATTTAGGGATTTCCTCTTTTTCTGAAGAAAAGTTCGACGAGGCTATT
GAGTATTTCAAAGAAGGAGTGTTGGTCTATGAGCAAAACGGATATGAACATGCTAACCGCTTATTAGACATTCTTTTCAT
GTTAGCGAAAACGAACTTTAAAGTAAATAAGAAAACTGAAGGAACAGCTGTTTATAATCATGGACTGTCATTGGCTAAAA
ACTTAAATGATGAAGTATTAACCAAAATGTTTGATTTCCTAAATGCCCTTTACATTGACGATAACAAAGAAATGCTAAAT
GAGATTCTTACTTATTTAGAATTTAAAACAATGTTTTCCGACGTGGAGGACTTAGCAACCGACGCAGCGAAGTATTATAC
AAAAAATGAAGACCATAAAGCGGCTGGATTATTTTATGAGAAAGTGCTTTATGCCCAAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_8)

(222-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

48.148

100

0.481
  rapF Bacillus subtilis subsp. subtilis str. 168

45.407

100

0.458