Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LDB25_RS07370 Genome accession   NZ_CP084695
Coordinates   1400532..1400816 (+) Length   94 a.a.
NCBI ID   WP_014417633.1    Uniprot ID   I2C4H1
Organism   Bacillus velezensis strain DJB5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1395532..1405816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDB25_RS07350 (LDB25_07335) - 1396776..1397684 (+) 909 WP_014417631.1 ketopantoate reductase family protein -
  LDB25_RS07355 (LDB25_07340) - 1397715..1398947 (-) 1233 WP_007409644.1 aminopeptidase -
  LDB25_RS07360 (LDB25_07345) - 1399048..1399182 (-) 135 WP_003154559.1 protein YkpC -
  LDB25_RS07365 (LDB25_07350) mreBH 1399254..1400261 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  LDB25_RS07370 (LDB25_07355) abrB 1400532..1400816 (+) 285 WP_014417633.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LDB25_RS07375 (LDB25_07360) - 1400989..1402293 (+) 1305 WP_014417634.1 ATP-binding protein -
  LDB25_RS07380 (LDB25_07365) - 1402295..1403122 (+) 828 WP_014417635.1 gamma-glutamylcyclotransferase -
  LDB25_RS07385 (LDB25_07370) ktrC 1403163..1403828 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  LDB25_RS07390 (LDB25_07375) ade 1403977..1405710 (+) 1734 WP_014417636.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10516.38 Da        Isoelectric Point: 5.8979

>NTDB_id=612460 LDB25_RS07370 WP_014417633.1 1400532..1400816(+) (abrB) [Bacillus velezensis strain DJB5]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKGRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=612460 LDB25_RS07370 WP_014417633.1 1400532..1400816(+) (abrB) [Bacillus velezensis strain DJB5]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGGTAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543