Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LDB25_RS05690 Genome accession   NZ_CP084695
Coordinates   1094391..1095344 (+) Length   317 a.a.
NCBI ID   WP_014417407.1    Uniprot ID   A0AAP4DIE0
Organism   Bacillus velezensis strain DJB5     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1089391..1100344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDB25_RS05665 (LDB25_05650) argF 1091208..1092179 (+) 972 WP_014417404.1 ornithine carbamoyltransferase -
  LDB25_RS05670 (LDB25_05655) - 1092255..1092434 (+) 180 WP_003155070.1 YjzC family protein -
  LDB25_RS05675 (LDB25_05660) - 1092471..1092656 (-) 186 WP_007409129.1 YjzD family protein -
  LDB25_RS05680 (LDB25_05665) - 1092917..1093651 (+) 735 WP_014417405.1 hypothetical protein -
  LDB25_RS05685 (LDB25_05670) - 1093734..1094300 (+) 567 WP_032863798.1 hypothetical protein -
  LDB25_RS05690 (LDB25_05675) med 1094391..1095344 (+) 954 WP_014417407.1 BMP family ABC transporter substrate-binding protein Regulator
  LDB25_RS05695 (LDB25_05680) comZ 1095357..1095548 (+) 192 WP_014417408.1 ComZ family protein Regulator
  LDB25_RS05700 (LDB25_05685) - 1095577..1095795 (-) 219 WP_007409123.1 hypothetical protein -
  LDB25_RS05705 (LDB25_05690) - 1095962..1096900 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  LDB25_RS05710 (LDB25_05695) fabF 1096923..1098161 (+) 1239 WP_014417409.1 beta-ketoacyl-ACP synthase II -
  LDB25_RS05715 (LDB25_05700) - 1098244..1099029 (+) 786 WP_014417410.1 DUF2268 domain-containing protein -
  LDB25_RS05720 (LDB25_05705) - 1099203..1100189 (+) 987 WP_014417411.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35343.93 Da        Isoelectric Point: 4.6686

>NTDB_id=612450 LDB25_RS05690 WP_014417407.1 1094391..1095344(+) (med) [Bacillus velezensis strain DJB5]
MITRLVMTFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKNNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHNFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNRTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=612450 LDB25_RS05690 WP_014417407.1 1094391..1095344(+) (med) [Bacillus velezensis strain DJB5]
TTGATCACCAGGCTTGTCATGACCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACTTGGTATGGGGGACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATTTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCATCTTATGGGAGAAGCAA
TGGGCTTTTTCGGGGGAATGACGGCCGCCCATATGTCAAAAAACAATGAGGTCGGCGTCATCGCCTCTTTTTTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGAGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACAACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCTCTGGTGGACA
AAGCATTTCAAGACAAAATCTCAGACCTTGTCAAAACGTATAACAGAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

77.918

100

0.779