Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   LDB25_RS05320 Genome accession   NZ_CP084695
Coordinates   1024485..1025063 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain DJB5     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1019485..1030063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDB25_RS05295 - 1019986..1020501 (-) 516 WP_369719112.1 methyl-accepting chemotaxis protein -
  LDB25_RS05300 - 1020745..1021404 (-) 660 Protein_980 protoglobin domain-containing protein -
  LDB25_RS05305 (LDB25_05290) - 1021401..1022924 (-) 1524 WP_014417355.1 FAD-dependent oxidoreductase -
  LDB25_RS05310 (LDB25_05295) - 1023049..1023906 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  LDB25_RS05315 (LDB25_05300) - 1023937..1024170 (-) 234 WP_007610478.1 IDEAL domain-containing protein -
  LDB25_RS05320 (LDB25_05305) comK 1024485..1025063 (+) 579 WP_003155179.1 competence protein ComK Regulator
  LDB25_RS05325 (LDB25_05310) - 1025209..1025580 (+) 372 WP_014417356.1 iron chaperone -
  LDB25_RS05330 (LDB25_05315) - 1025703..1026212 (+) 510 WP_014417357.1 MepB family protein -
  LDB25_RS05335 (LDB25_05320) - 1026441..1027151 (-) 711 WP_017417404.1 YrpD family protein -
  LDB25_RS05340 (LDB25_05325) - 1027347..1027616 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  LDB25_RS05345 (LDB25_05330) - 1027649..1027966 (-) 318 WP_003155166.1 YbjQ family protein -
  LDB25_RS05350 (LDB25_05335) - 1028008..1029477 (-) 1470 WP_032863809.1 sodium:solute symporter family protein -
  LDB25_RS05355 (LDB25_05340) - 1029474..1029674 (-) 201 WP_007409181.1 DUF3311 domain-containing protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=612447 LDB25_RS05320 WP_003155179.1 1024485..1025063(+) (comK) [Bacillus velezensis strain DJB5]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=612447 LDB25_RS05320 WP_003155179.1 1024485..1025063(+) (comK) [Bacillus velezensis strain DJB5]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACTATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGTTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCGCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTATGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823