Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LDB25_RS04260 Genome accession   NZ_CP084695
Coordinates   831649..832440 (+) Length   263 a.a.
NCBI ID   WP_003155502.1    Uniprot ID   A0A9Q3QM78
Organism   Bacillus velezensis strain DJB5     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 826649..837440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDB25_RS04235 (LDB25_04225) - 828642..829526 (+) 885 WP_014417233.1 PhzF family phenazine biosynthesis isomerase -
  LDB25_RS04240 (LDB25_04230) - 829603..830187 (+) 585 WP_007408549.1 nitroreductase -
  LDB25_RS04245 (LDB25_04235) - 830228..830419 (-) 192 WP_003155508.1 YfhD family protein -
  LDB25_RS04250 (LDB25_04240) - 830490..830600 (-) 111 WP_003155504.1 YfhE family protein -
  LDB25_RS04255 (LDB25_04245) - 830658..831557 (-) 900 WP_014417234.1 TIGR01777 family oxidoreductase -
  LDB25_RS04260 (LDB25_04250) recX 831649..832440 (+) 792 WP_003155502.1 recombination regulator RecX Regulator
  LDB25_RS04265 (LDB25_04255) - 832447..832761 (+) 315 WP_007408553.1 YfhH family protein -
  LDB25_RS04270 (LDB25_04260) - 832906..834099 (+) 1194 WP_029973982.1 MFS transporter -
  LDB25_RS04275 (LDB25_04265) - 834139..834528 (-) 390 WP_014417236.1 DUF2606 family protein -
  LDB25_RS04280 (LDB25_04270) - 834491..835402 (-) 912 WP_014417237.1 trypsin-like serine peptidase -
  LDB25_RS04285 (LDB25_04275) - 835547..835699 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  LDB25_RS04290 (LDB25_04280) - 835823..836092 (+) 270 WP_003155492.1 YfhJ family protein -
  LDB25_RS04295 (LDB25_04285) - 836224..836751 (+) 528 WP_014417238.1 SH3 domain-containing protein -
  LDB25_RS04300 (LDB25_04290) - 836837..837172 (+) 336 WP_029973977.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30978.18 Da        Isoelectric Point: 6.2735

>NTDB_id=612442 LDB25_RS04260 WP_003155502.1 831649..832440(+) (recX) [Bacillus velezensis strain DJB5]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=612442 LDB25_RS04260 WP_003155502.1 831649..832440(+) (recX) [Bacillus velezensis strain DJB5]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCGGACGTGCTTGTGCGTTTTGACCTGAAGAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCGGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGCGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGTTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.087

100

0.791