Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   LDB25_RS01755 Genome accession   NZ_CP084695
Coordinates   330810..331208 (-) Length   132 a.a.
NCBI ID   WP_014416873.1    Uniprot ID   I2C179
Organism   Bacillus velezensis strain DJB5     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 325810..336208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDB25_RS01730 (LDB25_01725) - 325982..327184 (+) 1203 WP_014416870.1 GTP-binding protein -
  LDB25_RS01735 (LDB25_01730) - 327249..328385 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  LDB25_RS01740 (LDB25_01735) - 328400..328834 (+) 435 WP_014416871.1 RDD family protein -
  LDB25_RS01745 (LDB25_01740) - 328951..329229 (+) 279 WP_263612330.1 YckD family protein -
  LDB25_RS01750 (LDB25_01745) - 329333..330769 (+) 1437 WP_014416872.1 glycoside hydrolase family 1 protein -
  LDB25_RS01755 (LDB25_01750) nin/comJ 330810..331208 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  LDB25_RS01760 (LDB25_01755) nucA/comI 331229..331666 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LDB25_RS01765 (LDB25_01760) hxlB 331997..332554 (-) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  LDB25_RS01770 (LDB25_01765) hxlA 332551..333186 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  LDB25_RS01775 (LDB25_01770) - 333418..333780 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14893.89 Da        Isoelectric Point: 4.7846

>NTDB_id=612436 LDB25_RS01755 WP_014416873.1 330810..331208(-) (nin/comJ) [Bacillus velezensis strain DJB5]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLSFNIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=612436 LDB25_RS01755 WP_014416873.1 330810..331208(-) (nin/comJ) [Bacillus velezensis strain DJB5]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCTATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTCTTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C179

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.515

100

0.765