Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6742_RS21060 Genome accession   NZ_CP084692
Coordinates   4433628..4434254 (-) Length   208 a.a.
NCBI ID   WP_042719042.1    Uniprot ID   -
Organism   Enterobacter mori strain BC01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4428628..4439254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6742_RS21045 (K6742_21045) helD 4428866..4430920 (-) 2055 WP_212473698.1 DNA helicase IV -
  K6742_RS21050 (K6742_21050) - 4431044..4431490 (+) 447 WP_100165146.1 YccF domain-containing protein -
  K6742_RS21055 (K6742_21055) yccS 4431509..4433671 (+) 2163 WP_148399692.1 YccS family putative transporter -
  K6742_RS21060 (K6742_21060) sxy/tfoX 4433628..4434254 (-) 627 WP_042719042.1 TfoX/Sxy family DNA transformation protein Regulator
  K6742_RS21065 (K6742_21065) sulA 4434472..4434981 (+) 510 WP_089598374.1 SOS-induced cell division inhibitor SulA -
  K6742_RS21070 (K6742_21070) ompA 4435337..4436392 (+) 1056 WP_010429345.1 porin OmpA -
  K6742_RS21075 (K6742_21075) matP 4436457..4436909 (-) 453 WP_010429344.1 macrodomain Ter protein MatP -
  K6742_RS21080 (K6742_21080) - 4437096..4438856 (+) 1761 WP_120158486.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24057.66 Da        Isoelectric Point: 8.7699

>NTDB_id=612419 K6742_RS21060 WP_042719042.1 4433628..4434254(-) (sxy/tfoX) [Enterobacter mori strain BC01]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDNAVFAMVSEGELYLRACEESARYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRDKLLQLSSFALDAARKERCQRHQRNRLKDLPNLTFQLEVLLLEAGITNEETLRELGARKCWLKMRSKN
KALSIKVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQEHHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=612419 K6742_RS21060 WP_042719042.1 4433628..4434254(-) (sxy/tfoX) [Enterobacter mori strain BC01]
ATGAAAAAGATATCTTATGAGCGGATTTATAAATCGCAGGAATACCTCTCGCCGTTAGGCGAAATTCATCATCGGGCGCT
ATTCGGTGGGTACACCCTGGCGGTGGATAATGCGGTGTTCGCGATGGTGTCGGAGGGGGAACTCTACCTCCGGGCCTGTG
AAGAAAGTGCCAGGTATTGTGTAAAAAACGCCTCTTCGTTTCTGACGCTGATGAAACGGGGCCGTCCCGTCCTGCTTAAT
TATTATCGGGTGGACGACGGGCTGTGGCAGGACAGGGACAAATTGCTCCAGCTTTCCTCCTTTGCTCTCGACGCGGCAAG
GAAGGAGCGCTGCCAGCGCCATCAGCGCAACCGGCTAAAAGATCTTCCGAACCTGACCTTTCAACTTGAGGTGCTGCTTT
TAGAAGCAGGCATCACTAATGAGGAAACCTTACGGGAACTGGGCGCCAGGAAATGCTGGTTAAAGATGAGGTCCAAAAAC
AAGGCCTTAAGTATTAAGGTGCTGTTCGCGCTGGAAGGTGCCATCGAAGGGCTACATGAAGCGGCGCTCCCGGCCGACAT
TCGCCGGGAGCTGACAGAGTGGTTTAATGCGCTGCCCGAGAGTCAGGAGCATCATTCCTCAAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.621

97.596

0.572