Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LGL96_RS13280 Genome accession   NZ_CP084656
Coordinates   2982248..2983630 (-) Length   460 a.a.
NCBI ID   WP_103972311.1    Uniprot ID   -
Organism   Pectobacterium versatile strain SR1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2977248..2988630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGL96_RS13250 (LGL96_13250) pepP 2977425..2978750 (-) 1326 WP_116362619.1 Xaa-Pro aminopeptidase -
  LGL96_RS13255 (LGL96_13255) - 2978825..2979412 (-) 588 WP_103861511.1 YecA family protein -
  LGL96_RS13260 (LGL96_13260) zapA 2979605..2979934 (+) 330 WP_010284667.1 cell division protein ZapA -
  LGL96_RS13270 (LGL96_13270) - 2980232..2980879 (+) 648 WP_103972323.1 5-formyltetrahydrofolate cyclo-ligase -
  LGL96_RS13275 (LGL96_13275) nadR 2980876..2982129 (-) 1254 WP_103861510.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  LGL96_RS13280 (LGL96_13280) radA 2982248..2983630 (-) 1383 WP_103972311.1 DNA repair protein RadA Machinery gene
  LGL96_RS13285 (LGL96_13285) serB 2983648..2984625 (-) 978 WP_095701482.1 phosphoserine phosphatase -
  LGL96_RS13290 (LGL96_13290) - 2984782..2985480 (+) 699 WP_010296287.1 YtjB family periplasmic protein -
  LGL96_RS13295 (LGL96_13295) - 2985532..2986440 (-) 909 WP_225586356.1 hypothetical protein -
  LGL96_RS13300 (LGL96_13300) prfC 2986734..2988323 (+) 1590 WP_103972314.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49572.14 Da        Isoelectric Point: 7.4463

>NTDB_id=612356 LGL96_RS13280 WP_103972311.1 2982248..2983630(-) (radA) [Pectobacterium versatile strain SR1]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPHDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=612356 LGL96_RS13280 WP_103972311.1 2982248..2983630(-) (radA) [Pectobacterium versatile strain SR1]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGACTACCCGCGCTGGCAAGGGCAATGTAGCGC
CTGCCATGCCTGGAATACCATTACCGAAGTCCGCCTGGCCTCGGCGTCTGTGTCACGTTCTGACCGTCTCACTGGCTATG
CAGGCGAAAGCGCTGGCGTCAGCCGGGTACAGAAGCTCTCGGAAATCAGTCTTGAAGCCCTGCCGCGCTTTTCTACCGGC
TTTCAGGAATTTGACCGCGTTCTGGGCGGCGGCGTCGTTCCTGGCAGCGCCATTCTGATCGGCGGTAGCCCCGGCGCGGG
TAAAAGTACCCTGCTGTTGCAAACGCTCTGCAAGCTGTCAGAAAACATGAAAACCCTGTATGTCACCGGCGAAGAATCGT
TGCAGCAGGTGGCAATGCGGGCGCACAGACTCAATCTGCCGACCCAAAATCTCAACATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCTCCCGGCAGCGTGGCGCAGGTGCGTGAAACCGCCGCCTACCTAACGCGCTTCGCCAAAACGCGCGGCGTTG
CTATCGTGATGGTCGGCCACGTCACCAAAGACGGTTCGCTCGCCGGGCCAAAAGTATTGGAACACTGCATCGACTGCTCC
GTGCTGCTGGATGGCGATGCCGATTCTCGCTTCCGCACCCTGCGCAGCCATAAAAACCGTTTCGGTGCCGTTAATGAGCT
GGGCGTGTTCGCGATGACGGAACAAGGTCTACGCGAGATCAGCAATCCGTCGGCGATTTTCCTCAGCCGCGGAGACGAAA
TCACGTCCGGCAGTTCGGTCATGGTGGTGTGGGAAGGCACACGTCCGCTGCTGGTCGAAATTCAAGCGCTGGTAGATCAA
TCGATGATGGCCAATCCGCGTCGCGTGGCGGTCGGGCTGGAGCAAAACCGATTAGCCATCCTGCTGGCGGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCGGATCAGGATGTGTTCGTGAATGTCGTCGGCGGCGTTAAAGTCACCGAAACCAGTGCCG
ACCTAGCGCTGCTGCTATCGCTGGTCTCCAGCTTCCGCGACCGCCCGCTGCCGCACGATCTGGTCATCTTCGGTGAAGTC
GGTCTGGCGGGCGAAATCCGCCCGGTTCCCAGCGGACAAGAGCGGATTACCGAAGCCGCCAAGCATGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCTGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTAGCCGACGCGC
TAGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

AAA domain (AAA_25)

(89-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus mitis NCTC 12261

42.637

98.913

0.422
  radA Streptococcus pneumoniae Rx1

42.637

98.913

0.422
  radA Streptococcus pneumoniae D39

42.637

98.913

0.422
  radA Streptococcus pneumoniae R6

42.637

98.913

0.422
  radA Streptococcus pneumoniae TIGR4

42.637

98.913

0.422
  radA Streptococcus mitis SK321

42.637

98.913

0.422