Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LGL95_RS19730 Genome accession   NZ_CP084654
Coordinates   4438848..4440230 (+) Length   460 a.a.
NCBI ID   WP_103972311.1    Uniprot ID   -
Organism   Pectobacterium versatile strain SR12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4433848..4445230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGL95_RS19710 (LGL95_19710) prfC 4434152..4435741 (-) 1590 WP_039481772.1 peptide chain release factor 3 -
  LGL95_RS19715 (LGL95_19715) - 4436035..4436943 (+) 909 WP_226305952.1 hypothetical protein -
  LGL95_RS19720 (LGL95_19720) - 4436998..4437696 (-) 699 WP_010296287.1 YtjB family periplasmic protein -
  LGL95_RS19725 (LGL95_19725) serB 4437853..4438830 (+) 978 WP_095701482.1 phosphoserine phosphatase -
  LGL95_RS19730 (LGL95_19730) radA 4438848..4440230 (+) 1383 WP_103972311.1 DNA repair protein RadA Machinery gene
  LGL95_RS19735 (LGL95_19735) nadR 4440349..4441602 (+) 1254 WP_103861510.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  LGL95_RS19740 (LGL95_19740) - 4441599..4442246 (-) 648 WP_103972323.1 5-formyltetrahydrofolate cyclo-ligase -
  LGL95_RS19750 (LGL95_19750) zapA 4442544..4442873 (-) 330 WP_010284667.1 cell division protein ZapA -
  LGL95_RS19755 (LGL95_19755) - 4443066..4443653 (+) 588 WP_103861511.1 YecA family protein -
  LGL95_RS19760 (LGL95_19760) pepP 4443728..4445053 (+) 1326 WP_039493867.1 Xaa-Pro aminopeptidase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49572.14 Da        Isoelectric Point: 7.4463

>NTDB_id=612311 LGL95_RS19730 WP_103972311.1 4438848..4440230(+) (radA) [Pectobacterium versatile strain SR12]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPHDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=612311 LGL95_RS19730 WP_103972311.1 4438848..4440230(+) (radA) [Pectobacterium versatile strain SR12]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGACTACCCGCGCTGGCAAGGGCAATGTAGCGC
CTGCCATGCCTGGAATACCATTACCGAAGTCCGCCTGGCCTCGGCGTCTGTGTCACGTTCTGACCGTCTCACTGGCTATG
CAGGCGAAAGCGCTGGCGTCAGCCGGGTACAGAAGCTCTCGGAAATCAGTCTTGAAGCCCTGCCGCGCTTTTCTACCGGC
TTTCAGGAATTTGACCGCGTTCTGGGCGGCGGCGTCGTTCCTGGCAGCGCCATTCTGATCGGCGGTAGCCCCGGCGCGGG
TAAAAGTACCCTGCTGTTGCAAACGCTCTGCAAGCTGTCAGAAAACATGAAAACCCTGTATGTCACCGGCGAAGAATCGT
TGCAGCAGGTGGCAATGCGGGCGCACAGACTCAATCTGCCGACCCAAAATCTCAACATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCTCCCGGCAGCGTGGCGCAGGTGCGTGAAACCGCCGCCTACCTAACGCGCTTCGCCAAAACGCGCGGCGTTG
CTATCGTGATGGTCGGCCACGTCACCAAAGACGGTTCGCTCGCCGGGCCAAAAGTATTGGAACACTGCATCGACTGCTCC
GTGCTGCTGGATGGCGATGCCGATTCTCGCTTCCGCACCCTGCGCAGCCATAAAAACCGTTTCGGTGCCGTTAATGAGCT
GGGCGTGTTCGCGATGACGGAACAAGGTCTACGCGAGATCAGCAATCCGTCGGCGATTTTCCTCAGCCGCGGAGACGAAA
TCACGTCCGGCAGTTCGGTCATGGTGGTGTGGGAAGGCACACGTCCGCTGCTGGTCGAAATTCAAGCGCTGGTAGATCAA
TCGATGATGGCCAATCCGCGTCGCGTGGCGGTCGGGCTGGAGCAAAACCGATTAGCCATCCTGCTGGCGGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCGGATCAGGATGTGTTCGTGAATGTCGTCGGCGGCGTTAAAGTCACCGAAACCAGTGCCG
ACCTAGCGCTGCTGCTATCGCTGGTCTCCAGCTTCCGCGACCGCCCGCTGCCGCACGATCTGGTCATCTTCGGTGAAGTC
GGTCTGGCGGGCGAAATCCGCCCGGTTCCCAGCGGACAAGAGCGGATTACCGAAGCCGCCAAGCATGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCTGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTAGCCGACGCGC
TAGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

AAA domain (AAA_25)

(89-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus mitis NCTC 12261

42.637

98.913

0.422
  radA Streptococcus pneumoniae Rx1

42.637

98.913

0.422
  radA Streptococcus pneumoniae D39

42.637

98.913

0.422
  radA Streptococcus pneumoniae R6

42.637

98.913

0.422
  radA Streptococcus pneumoniae TIGR4

42.637

98.913

0.422
  radA Streptococcus mitis SK321

42.637

98.913

0.422