Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NOQ96_RS01910 Genome accession   NZ_CP101885
Coordinates   417984..419366 (+) Length   460 a.a.
NCBI ID   WP_023127273.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain M27432     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412984..424366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOQ96_RS01890 (NOQ96_01890) - 413821..414387 (-) 567 WP_003084491.1 hypothetical protein -
  NOQ96_RS01895 (NOQ96_01895) rsmD 414390..414986 (-) 597 WP_003084492.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NOQ96_RS01900 (NOQ96_01900) - 414986..416473 (-) 1488 WP_003084496.1 pitrilysin family protein -
  NOQ96_RS01905 (NOQ96_01905) - 416466..417863 (-) 1398 WP_003084498.1 pitrilysin family protein -
  NOQ96_RS01910 (NOQ96_01910) pilA 417984..419366 (+) 1383 WP_023127273.1 signal recognition particle-docking protein FtsY Machinery gene
  NOQ96_RS01915 (NOQ96_01915) ftsE 419363..420034 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  NOQ96_RS01920 (NOQ96_01920) ftsX 420034..421041 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  NOQ96_RS01925 (NOQ96_01925) rpoH 421155..422009 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  NOQ96_RS01930 (NOQ96_01930) - 422074..422679 (+) 606 WP_003084511.1 hypothetical protein -
  NOQ96_RS01935 (NOQ96_01935) mtgA 422684..423415 (-) 732 WP_003084512.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  NOQ96_RS01940 (NOQ96_01940) - 423452..423829 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  NOQ96_RS01945 (NOQ96_01945) thiS 423932..424132 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 48945.39 Da        Isoelectric Point: 4.4808

>NTDB_id=612102 NOQ96_RS01910 WP_023127273.1 417984..419366(+) (pilA) [Pseudomonas aeruginosa strain M27432]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPTDQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAEP
PAPVAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQ
GLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLR
PVEQPLQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGAD
SASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVE
LTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=612102 NOQ96_RS01910 WP_023127273.1 417984..419366(+) (pilA) [Pseudomonas aeruginosa strain M27432]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTACCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCCGAGCCG
CCGGCGCCGGTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGCCCCGAGGCGCC
CGTCGCACAACCCGAGCCTATCCTCGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCG
AGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAG
GGACTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCT
GCTCGACGACATCGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCA
AGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGC
CCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAA
GACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCC
GCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACTGGCGCCGAC
TCCGCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACG
CCTGCATACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCC
ATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAG
CTGACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCT
GCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCT
TCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(170-235)

SRP54-type protein, GTPase domain (SRP54)

(255-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

54.354

72.391

0.393