Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NPX81_RS16175 Genome accession   NZ_CP101866
Coordinates   3337407..3338012 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain LP5-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3332407..3343012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPX81_RS16155 (NPX81_16160) aes 3332548..3333507 (+) 960 WP_000801796.1 acetyl esterase -
  NPX81_RS16160 (NPX81_16165) hemH 3333504..3334466 (-) 963 WP_001250107.1 ferrochelatase -
  NPX81_RS16165 (NPX81_16170) adk 3334598..3335242 (-) 645 WP_001220233.1 adenylate kinase -
  NPX81_RS16170 (NPX81_16175) htpG 3335423..3337297 (-) 1875 WP_040062450.1 molecular chaperone HtpG -
  NPX81_RS16175 (NPX81_16180) recR 3337407..3338012 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  NPX81_RS16180 (NPX81_16185) ybaB 3338012..3338341 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  NPX81_RS16185 (NPX81_16190) dnaX 3338394..3340325 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  NPX81_RS16190 (NPX81_16195) apt 3340454..3341005 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  NPX81_RS16195 (NPX81_16200) ybaN 3341158..3341535 (-) 378 WP_001188905.1 DUF454 family protein -
  NPX81_RS16200 (NPX81_16205) priC 3341605..3342132 (+) 528 WP_000844876.1 primosomal replication protein N'' -
  NPX81_RS16205 (NPX81_16210) rsmS 3342146..3342307 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=612072 NPX81_RS16175 WP_001195025.1 3337407..3338012(-) (recR) [Escherichia coli strain LP5-1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=612072 NPX81_RS16175 WP_001195025.1 3337407..3338012(-) (recR) [Escherichia coli strain LP5-1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443