Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LGO15_RS16505 Genome accession   NZ_CP084622
Coordinates   3219854..3221545 (-) Length   563 a.a.
NCBI ID   WP_226085312.1    Uniprot ID   -
Organism   Mesobacillus sp. S13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3214854..3226545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGO15_RS16480 - 3215873..3216136 (+) 264 WP_167831495.1 DUF2627 domain-containing protein -
  LGO15_RS16485 - 3216213..3216947 (-) 735 WP_226085311.1 glycerophosphodiester phosphodiesterase -
  LGO15_RS16490 - 3216992..3217132 (+) 141 WP_167831497.1 YycC family protein -
  LGO15_RS16495 spo0A 3217324..3218121 (-) 798 WP_167831498.1 sporulation transcription factor Spo0A -
  LGO15_RS16500 spoIVB 3218443..3219729 (-) 1287 WP_167831499.1 SpoIVB peptidase -
  LGO15_RS16505 recN 3219854..3221545 (-) 1692 WP_226085312.1 DNA repair protein RecN Machinery gene
  LGO15_RS16510 ahrC 3221562..3222011 (-) 450 WP_041967930.1 transcriptional regulator AhrC/ArgR -
  LGO15_RS16515 - 3222209..3223057 (-) 849 WP_167831501.1 TlyA family RNA methyltransferase -
  LGO15_RS16520 dxs 3223061..3224953 (-) 1893 WP_226085313.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LGO15_RS16525 - 3225297..3226190 (-) 894 WP_167831503.1 polyprenyl synthetase family protein -
  LGO15_RS16530 - 3226193..3226426 (-) 234 WP_167831504.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63599.25 Da        Isoelectric Point: 5.2068

>NTDB_id=612018 LGO15_RS16505 WP_226085312.1 3219854..3221545(-) (recN) [Mesobacillus sp. S13]
MLNELSIRNFAIIESLSVSFNKGLTVLTGETGAGKSIIIDAIHLLVGGRGSAEFVRHGEDKAEIEGLFHLEGENHPSYAK
AAEFGIEIEDAMIVLRRDISASGKSVCRINGKLVTIAVLREVGSTLIDIHGQHEHQELMDETKHINLLDQFGAEEILPAL
QEYQHVFRSFEQTQKKLKNLSENEQQMAHRLDLIQFQHDEILSADLRLNEDEELFEEKRKLSNFEKIYESIQTSYSALQG
EQKGLDWIGLVMDNLQNAADLDPDYKNVADTVANSFYMLEDAARTIRNELDSLEYDPKRLNDIEDRLNEINQLKRKYGNT
IEEILEYSSKIEEEIETLQNKEVHIDQMEKELASLKKDLRIEANNLTQTRKKYAKKLTKLIHKELKELYMEKTVFDLRID
ADPDHFHKNGADKVEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQSIAEKIY
NVSTGSQVLCISHLPQVAAMADTHLYIAKVIKNGRTKTSVTPLSSSEKVKEIVRMISGVEVTDLTKQHAEELLKLAQNMK
AVT

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=612018 LGO15_RS16505 WP_226085312.1 3219854..3221545(-) (recN) [Mesobacillus sp. S13]
TTGTTAAATGAATTATCGATTCGCAACTTCGCAATTATTGAATCATTATCCGTTTCTTTTAATAAAGGACTGACCGTACT
CACCGGAGAAACAGGGGCCGGGAAATCCATCATCATCGATGCCATTCATCTCCTTGTGGGAGGAAGAGGCTCGGCGGAAT
TCGTACGCCATGGTGAAGATAAAGCTGAAATTGAAGGTTTGTTCCACCTTGAAGGGGAGAATCATCCAAGTTATGCAAAG
GCAGCCGAATTTGGCATTGAAATTGAAGATGCGATGATTGTCTTGAGAAGGGATATTTCGGCGTCTGGAAAAAGTGTGTG
CCGCATCAACGGCAAGCTGGTCACGATTGCAGTCCTGCGTGAAGTAGGCTCGACACTGATTGATATCCATGGTCAGCATG
AGCACCAGGAATTAATGGATGAGACAAAGCATATCAATCTTCTTGACCAATTCGGAGCAGAGGAAATCCTGCCTGCGCTG
CAAGAATACCAGCACGTTTTTCGATCTTTTGAACAAACACAGAAAAAGCTGAAAAACTTAAGTGAAAATGAGCAGCAAAT
GGCTCACAGACTCGATTTGATTCAATTTCAGCATGATGAAATCCTCTCGGCTGACCTAAGGCTAAACGAGGACGAGGAAC
TTTTTGAAGAGAAGCGTAAGCTCAGCAACTTCGAAAAGATCTATGAGAGTATCCAAACCAGTTATTCGGCATTGCAGGGT
GAGCAAAAGGGCCTTGATTGGATTGGCCTGGTCATGGATAATCTTCAGAATGCAGCAGACCTTGATCCCGACTATAAGAA
TGTTGCCGACACAGTAGCGAACAGCTTTTATATGCTTGAGGATGCTGCAAGGACGATCAGGAATGAATTGGATTCACTTG
AATATGATCCGAAGCGCTTGAATGATATTGAAGATAGGCTGAACGAGATCAACCAATTAAAACGGAAATATGGAAATACG
ATCGAAGAAATTCTGGAGTACTCCTCTAAAATAGAGGAAGAAATCGAAACGCTTCAAAACAAGGAAGTCCATATTGACCA
GATGGAAAAAGAGCTCGCCTCACTTAAAAAGGATCTGCGAATCGAGGCCAATAATTTGACTCAAACTCGCAAAAAATATG
CTAAAAAACTGACGAAATTAATTCATAAAGAATTAAAGGAACTATATATGGAGAAGACGGTATTCGACCTCAGGATTGAC
GCAGATCCTGACCATTTCCATAAAAATGGCGCCGATAAGGTCGAGTTTTATATCTCTACAAATCCGGGCGAACCTTTGAA
GCCTTTGTCAAAGATTGCATCCGGCGGGGAACTTTCGCGGATCATGCTAGCCTTAAAAAGCATCTTCTCAAAACATCAAG
GTGTCACCTCCATCATTTTCGATGAAGTGGATACAGGAGTCAGCGGTCGGGTGGCTCAATCAATCGCTGAAAAAATTTAC
AATGTCTCGACGGGGTCACAGGTTCTTTGCATATCCCATTTGCCTCAAGTTGCCGCAATGGCTGATACTCACCTGTATAT
CGCAAAGGTCATCAAGAATGGCAGGACAAAAACTTCCGTCACTCCGCTGTCTTCATCTGAGAAGGTAAAGGAGATTGTCC
GGATGATTTCAGGAGTCGAAGTTACTGACCTGACGAAACAACATGCAGAAGAATTGCTGAAGCTTGCACAGAATATGAAG
GCAGTTACATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.24

100

0.645