Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NPX80_RS19425 Genome accession   NZ_CP101858
Coordinates   4007585..4008025 (-) Length   146 a.a.
NCBI ID   WP_000360895.1    Uniprot ID   B7LFX5
Organism   Escherichia coli strain LP50-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4002585..4013025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPX80_RS19400 (NPX80_19405) coaE 4003075..4003695 (-) 621 WP_001269527.1 dephospho-CoA kinase -
  NPX80_RS19405 (NPX80_19410) - 4003720..4003764 (+) 45 WP_120795372.1 protein YacM -
  NPX80_RS19410 (NPX80_19415) guaC 4003920..4004963 (+) 1044 WP_001217338.1 GMP reductase -
  NPX80_RS19415 (NPX80_19420) hofC 4004998..4006200 (-) 1203 WP_000157234.1 protein transport protein HofC -
  NPX80_RS19420 (NPX80_19425) pilB 4006190..4007575 (-) 1386 WP_001025173.1 type II secretion system protein GspE Machinery gene
  NPX80_RS19425 (NPX80_19430) pilA 4007585..4008025 (-) 441 WP_000360895.1 prepilin peptidase-dependent pilin Machinery gene
  NPX80_RS19430 (NPX80_19435) nadC 4008228..4009121 (-) 894 WP_001135174.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NPX80_RS19435 (NPX80_19440) ampD 4009209..4009760 (+) 552 WP_000923721.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  NPX80_RS19440 (NPX80_19445) ampE 4009757..4010611 (+) 855 WP_000172006.1 beta-lactamase regulator AmpE -
  NPX80_RS19445 (NPX80_19450) aroP 4010654..4012027 (-) 1374 WP_000969914.1 aromatic amino acid transporter AroP -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15602.71 Da        Isoelectric Point: 4.3927

>NTDB_id=612010 NPX80_RS19425 WP_000360895.1 4007585..4008025(-) (pilA) [Escherichia coli strain LP50-1]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTH
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=612010 NPX80_RS19425 WP_000360895.1 4007585..4008025(-) (pilA) [Escherichia coli strain LP50-1]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCAC
TATGTTTCAGCCATGAGTGTGGCAAAAGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGACTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LFX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363