Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LGO15_RS07135 Genome accession   NZ_CP084622
Coordinates   1429012..1430829 (+) Length   605 a.a.
NCBI ID   WP_167833813.1    Uniprot ID   -
Organism   Mesobacillus sp. S13     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1424012..1435829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGO15_RS07115 spxA 1424225..1424620 (+) 396 WP_167833817.1 transcriptional regulator SpxA -
  LGO15_RS07120 mecA 1425114..1425785 (+) 672 WP_167833816.1 adaptor protein MecA -
  LGO15_RS07125 cls 1425932..1427443 (+) 1512 WP_167833815.1 cardiolipin synthase -
  LGO15_RS07130 - 1427642..1428850 (+) 1209 WP_226087181.1 competence protein CoiA -
  LGO15_RS07135 pepF 1429012..1430829 (+) 1818 WP_167833813.1 oligoendopeptidase F Regulator
  LGO15_RS07140 - 1431671..1432552 (-) 882 WP_167833812.1 ClpXP adapter SpxH family protein -
  LGO15_RS07145 - 1432549..1432950 (-) 402 WP_167833811.1 globin -
  LGO15_RS07150 - 1433276..1433914 (-) 639 WP_167833834.1 lytic transglycosylase domain-containing protein -
  LGO15_RS07155 - 1433935..1434522 (-) 588 WP_167833810.1 CYTH domain-containing protein -
  LGO15_RS07160 - 1434641..1435021 (+) 381 WP_167833809.1 hypothetical protein -
  LGO15_RS07165 - 1435056..1435694 (+) 639 WP_167833808.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69977.49 Da        Isoelectric Point: 4.7350

>NTDB_id=612007 LGO15_RS07135 WP_167833813.1 1429012..1430829(+) (pepF) [Mesobacillus sp. S13]
MSNESAVKKLPVRDEVSTENTWRLEDIFAVDEQWEQEFNEVKGLIPSVQEYQGKLGDSAEQLYNALQLQDKMLERLGRLY
TYAHMRYDQDTTNSFYQGMDDRIKNLYSQAASALAFIVPEILAVDEEKIKGFLNEKEELKLYEHALEEINLQRPHILSAE
EEALLAQASEVMSSPSNTFGMLNNADLEFPSIKDENGEDVEITHGRFIRFLESEDRRVREDAFKAVYKTYGSFKNTFAST
LSGNIKKDNFNARIRKYDSARHAALAANNIPESVYENLVNTVNDNLHLLHRYVKLRRKVLGLEKLHMYDLYTPLVKDVKM
EIPYGEAKEYVLKGLAPLGDEYNNILQEGFENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKSQPYPYGNYSIFVAEVASTCNEALLNDYMLKTIDDEQKRLYLLNHYLEGFRGTVFRQTMFAEFEHMIHQKAQ
NNEALTADSLTKDYYELNKKYFGEEDIMIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVDRYIDF
LKSGSSDYPIEVLKKAGVDMTSAKPIQEALKVFEEKLNEMEALLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=612007 LGO15_RS07135 WP_167833813.1 1429012..1430829(+) (pepF) [Mesobacillus sp. S13]
ATGTCAAATGAATCTGCAGTAAAGAAATTGCCAGTAAGAGACGAGGTTTCCACAGAGAATACGTGGAGACTTGAGGATAT
TTTTGCAGTTGATGAGCAATGGGAACAAGAATTCAATGAAGTGAAGGGCTTGATTCCTTCTGTCCAGGAGTATCAGGGCA
AGCTAGGCGATAGCGCGGAACAACTATATAATGCACTACAGTTGCAGGATAAAATGCTTGAGCGTCTCGGAAGACTTTAT
ACATACGCGCATATGCGCTATGACCAGGACACAACCAATTCCTTTTACCAAGGGATGGATGACCGTATCAAGAATCTTTA
TTCTCAAGCAGCAAGCGCGCTTGCCTTCATCGTACCAGAAATTCTTGCTGTGGATGAAGAGAAGATCAAGGGCTTTCTGA
ATGAAAAAGAAGAATTGAAGCTTTATGAGCATGCATTGGAGGAAATCAACCTTCAGCGCCCTCATATTCTTTCCGCTGAA
GAGGAAGCACTTCTGGCTCAGGCTTCCGAGGTGATGAGCTCACCTTCAAATACATTTGGAATGCTGAACAATGCCGATCT
CGAATTTCCTTCCATTAAGGATGAGAACGGAGAAGATGTGGAAATCACGCACGGCCGTTTCATCAGGTTCCTGGAAAGCG
AAGATCGCAGGGTTCGTGAGGATGCTTTCAAAGCTGTGTATAAAACATATGGCAGCTTTAAGAATACTTTTGCCAGCACA
TTGAGCGGCAATATCAAAAAGGATAACTTCAATGCAAGGATCCGCAAATATGACTCTGCGAGACATGCTGCGCTTGCTGC
GAACAATATCCCTGAAAGTGTCTATGAAAACCTTGTGAATACGGTGAATGACAATCTGCATCTCCTTCACAGATATGTTA
AGCTTCGCAGGAAGGTATTAGGCCTCGAGAAGCTTCATATGTATGATCTGTACACACCGCTTGTCAAGGATGTGAAGATG
GAGATTCCTTATGGAGAAGCAAAGGAATATGTCCTAAAAGGTTTAGCGCCTCTTGGCGATGAATATAACAACATCCTTCA
AGAAGGATTCGAAAACCGCTGGGTGGATGTGTATGAGAACAAAGGGAAGCGCAGCGGAGCCTATTCATCAGGAGCTTATG
GCACAAATCCATATATTTTGATGAACTGGCAGGACAATGTAAATAATTTGTTTACGCTGGCGCATGAATTCGGACATTCC
GTACACAGCTACTACACAAGAAAATCCCAGCCGTATCCTTACGGCAACTACTCAATTTTCGTTGCTGAAGTGGCTTCAAC
TTGCAACGAAGCATTATTGAATGACTATATGCTAAAAACCATCGATGATGAGCAGAAGCGTCTGTATCTATTGAATCATT
ACCTCGAAGGCTTCCGTGGAACAGTATTCAGACAGACGATGTTTGCTGAATTTGAACATATGATCCACCAAAAAGCCCAG
AATAACGAGGCATTGACAGCTGATTCACTGACAAAGGACTACTACGAACTAAACAAAAAGTATTTTGGTGAAGAGGATAT
CATGATTGATGAAGAAATCGGTCTTGAATGGTCAAGAATCCCACACTTCTACTACAATTACTATGTTTACCAGTATGCGA
CTGGCTTCAGTGCAGCAACGGCGCTCAGCAAACAGATCCTTGAAGAAGGCCAGCCGGCTGTTGACCGCTATATTGACTTC
CTGAAATCAGGCAGCTCAGATTATCCGATCGAAGTATTGAAAAAGGCAGGCGTCGATATGACAAGTGCAAAACCAATACA
GGAAGCATTGAAGGTCTTTGAAGAAAAGTTAAACGAAATGGAAGCATTGCTTTCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.327

98.182

0.484