Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LGO15_RS06975 Genome accession   NZ_CP084622
Coordinates   1393993..1394943 (+) Length   316 a.a.
NCBI ID   WP_167832181.1    Uniprot ID   -
Organism   Mesobacillus sp. S13     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1388993..1399943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGO15_RS06960 - 1391778..1391963 (-) 186 WP_167832178.1 YjzD family protein -
  LGO15_RS06965 - 1392224..1392961 (+) 738 WP_226087172.1 alpha/beta fold hydrolase -
  LGO15_RS06970 - 1393030..1393851 (+) 822 WP_226087173.1 hypothetical protein -
  LGO15_RS06975 med 1393993..1394943 (+) 951 WP_167832181.1 BMP family ABC transporter substrate-binding protein Regulator
  LGO15_RS06980 comZ 1394969..1395157 (+) 189 WP_167832182.1 ComZ family protein Regulator
  LGO15_RS06985 - 1395186..1395494 (-) 309 WP_226087174.1 hypothetical protein -
  LGO15_RS06990 - 1395809..1396741 (+) 933 WP_226087175.1 beta-ketoacyl-ACP synthase III -
  LGO15_RS06995 fabF 1396802..1398043 (+) 1242 WP_226087838.1 beta-ketoacyl-ACP synthase II -
  LGO15_RS07000 - 1398732..1399715 (+) 984 WP_226087176.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34905.22 Da        Isoelectric Point: 4.4926

>NTDB_id=612002 LGO15_RS06975 WP_167832181.1 1393993..1394943(+) (med) [Mesobacillus sp. S13]
MLKRFGLILLSLLLLGGCGQPLSTGKVEKVGLLVPETINDQVWGTKGYRGLLQIQSSLGVDVFFKEGMNSQEAVEDAVGE
FDRQGVNLIYGHGNEYAAYFNKISSKYPDIHFISFNGDARGKNTTSLNFKAYAMGFFGGMVASHMSETGKVGIIAAYEWQ
PEVEGFYDGAMFENNDLKVDIRLVGHWDDQEKALDVLDDVLAEGADVIYPAGDGYNVPVIERVKDRGLYVIGYISDQSDF
GESTVLTSTVQHVDDLYELTAEKFNNGELKSGNLSFDFQDGVISLGKFSPKVDSKFRERIGTYINSYKETGKLPNQ

Nucleotide


Download         Length: 951 bp        

>NTDB_id=612002 LGO15_RS06975 WP_167832181.1 1393993..1394943(+) (med) [Mesobacillus sp. S13]
ATGCTGAAACGTTTCGGGCTAATATTGTTAAGCCTTCTTTTGCTTGGGGGATGCGGACAACCTCTTTCCACGGGCAAGGT
GGAGAAAGTAGGCCTCTTGGTGCCTGAAACTATAAATGATCAGGTGTGGGGGACGAAAGGGTATAGGGGACTTCTGCAAA
TCCAATCGAGCCTGGGGGTTGATGTCTTTTTCAAAGAAGGGATGAATTCTCAGGAAGCCGTTGAGGATGCAGTGGGGGAG
TTCGATCGGCAGGGAGTTAACCTTATATATGGGCATGGAAATGAATACGCTGCCTATTTCAATAAGATTTCAAGTAAATA
TCCTGACATTCATTTCATTAGTTTTAACGGAGATGCCAGGGGAAAAAATACAACGAGCCTAAACTTCAAGGCATATGCTA
TGGGGTTTTTTGGCGGAATGGTCGCCAGCCATATGTCTGAAACTGGTAAGGTAGGAATCATTGCAGCGTATGAATGGCAG
CCAGAAGTGGAAGGCTTTTATGATGGTGCGATGTTTGAAAATAATGATCTGAAGGTAGACATTCGCCTTGTTGGCCACTG
GGATGACCAAGAAAAGGCACTCGATGTCCTGGACGATGTATTGGCTGAGGGAGCTGATGTCATATACCCCGCTGGAGATG
GGTATAATGTACCTGTCATTGAAAGGGTAAAGGACCGAGGCTTATACGTGATCGGCTATATTTCCGACCAATCGGATTTC
GGGGAGTCCACGGTATTAACGAGTACTGTCCAGCATGTTGATGACTTGTATGAACTGACAGCCGAAAAGTTCAACAATGG
GGAGCTTAAGTCAGGAAACCTGTCATTCGACTTTCAGGACGGTGTAATCTCCCTTGGTAAATTCAGTCCTAAAGTCGACT
CTAAATTCAGGGAGAGAATAGGTACTTATATTAATTCTTATAAAGAAACCGGTAAATTGCCTAACCAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

54.14

99.367

0.538