Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LGO15_RS00585 Genome accession   NZ_CP084622
Coordinates   113021..114400 (+) Length   459 a.a.
NCBI ID   WP_167834076.1    Uniprot ID   -
Organism   Mesobacillus sp. S13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 108021..119400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGO15_RS00565 - 108140..108601 (+) 462 WP_167834072.1 CtsR family transcriptional regulator -
  LGO15_RS00570 - 108629..109177 (+) 549 WP_226086346.1 UvrB/UvrC motif-containing protein -
  LGO15_RS00575 - 109180..110262 (+) 1083 WP_167834074.1 protein arginine kinase -
  LGO15_RS00580 clpC 110267..112705 (+) 2439 WP_167834075.1 ATP-dependent protease ATP-binding subunit ClpC -
  LGO15_RS00585 radA 113021..114400 (+) 1380 WP_167834076.1 DNA repair protein RadA Machinery gene
  LGO15_RS00590 disA 114405..115478 (+) 1074 WP_226086347.1 DNA integrity scanning diadenylate cyclase DisA -
  LGO15_RS00595 - 115724..116815 (+) 1092 WP_167834078.1 PIN/TRAM domain-containing protein -
  LGO15_RS00600 ispD 116964..117659 (+) 696 WP_226086348.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LGO15_RS00605 ispF 117702..118184 (+) 483 WP_226086349.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49669.99 Da        Isoelectric Point: 7.4336

>NTDB_id=611993 LGO15_RS00585 WP_167834076.1 113021..114400(+) (radA) [Mesobacillus sp. S13]
MAKRKTKFMCQECGYESPKWMGKCPGCGQWNKMVEEVESTGSTRRGAFANTGNTGVAAKATPITSIETVSEPRITTDLNE
LNRVLGGGVVRGSLVLIGGDPGIGKSTLLLQVSYQLAKKAHSVLYISGEESMRQTKLRADRLGVTSDNLLVYSETNLHEI
SLTIENSNPDFVIVDSIQTIFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLY
FEGERHHTYRILRAVKNRFGSTNEMGIFEMKEVGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALISPTS
FGNPRRMATGIDHNRVSLLMAVLEKRVGLLLANQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDKPTRASDCIIGEVGL
TGEVRRVSRIEQRVQEAAKLGFERIILPENNLGGWTPPRGVELIGVSSVSHALKVTLGG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=611993 LGO15_RS00585 WP_167834076.1 113021..114400(+) (radA) [Mesobacillus sp. S13]
ATGGCAAAAAGAAAAACAAAATTCATGTGCCAGGAATGTGGCTATGAATCTCCGAAATGGATGGGAAAATGTCCGGGTTG
CGGGCAATGGAATAAGATGGTCGAGGAAGTGGAAAGCACTGGATCGACAAGAAGAGGTGCGTTTGCCAATACAGGAAATA
CGGGTGTTGCCGCAAAGGCCACTCCTATCACCAGTATTGAAACAGTAAGCGAGCCGCGCATTACAACAGACTTGAATGAG
TTGAACCGTGTACTTGGAGGCGGGGTAGTCAGAGGGTCACTTGTGCTGATTGGCGGGGACCCGGGTATTGGGAAATCGAC
CTTATTGCTGCAGGTCTCTTACCAGCTGGCTAAAAAGGCTCATTCAGTCCTTTATATTTCTGGTGAGGAGTCGATGAGGC
AAACGAAACTGCGCGCGGATCGGCTTGGTGTAACATCGGATAATCTGCTTGTATATTCGGAAACAAACCTGCATGAAATC
AGTCTTACGATCGAAAACAGCAATCCTGACTTTGTTATTGTGGATTCAATCCAAACCATTTTCCATCCGGAAGTGACCTC
CGCTCCAGGGAGCGTGTCACAAGTAAGGGAATGTACAGCAGAGTTAATGAGGATTGCAAAAACAAAGGGAATTGCGATTT
TTATTGTCGGGCATGTTACGAAGGAAGGGTCCATTGCAGGACCAAGACTTCTGGAGCATATGGTCGACACCGTACTTTAT
TTTGAAGGCGAGAGGCACCATACGTATCGAATCCTCCGGGCTGTAAAAAACCGATTTGGGTCGACAAATGAAATGGGTAT
TTTTGAAATGAAGGAAGTCGGACTGGAAGAAGTGGCAAACCCATCAGAGATTTTTTTAGAGGAAAGATCCCAGGGAGCTT
CCGGTTCAACGGTTGTGGCTTCTATGGAAGGAACGCGGCCTGTATTGGTTGAAATCCAGGCGCTGATTTCGCCAACGAGC
TTTGGGAATCCGAGGCGAATGGCTACCGGTATCGACCATAATCGTGTATCGCTGCTGATGGCCGTGCTGGAGAAGCGTGT
CGGTTTGCTGCTGGCTAATCAGGATGCTTATTTGAAGGTCGCCGGCGGAGTGAAGCTGGATGAACCGGCGATTGACCTTG
CGGTGGCAGTCAGCATTGCTTCAAGCTTCAGGGATAAACCGACTCGCGCTTCGGACTGCATCATCGGCGAGGTAGGCCTG
ACAGGTGAAGTCAGGAGGGTCTCTAGGATTGAACAGCGCGTCCAGGAAGCCGCGAAGCTTGGCTTTGAAAGAATTATTTT
ACCGGAGAATAATCTTGGTGGATGGACACCGCCAAGGGGAGTGGAGCTTATCGGGGTATCATCGGTCAGCCATGCATTAA
AAGTCACCTTAGGGGGTTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-223)

Subunit ChlI of Mg-chelatase (ChlI)

(367-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

76.522

100

0.767
  radA Streptococcus mitis NCTC 12261

63.436

98.911

0.627
  radA Streptococcus mitis SK321

63.436

98.911

0.627
  radA Streptococcus pneumoniae Rx1

63.216

98.911

0.625
  radA Streptococcus pneumoniae D39

63.216

98.911

0.625
  radA Streptococcus pneumoniae R6

63.216

98.911

0.625
  radA Streptococcus pneumoniae TIGR4

63.216

98.911

0.625