Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LDO17_RS16755 Genome accession   NZ_CP084539
Coordinates   3541161..3542876 (-) Length   571 a.a.
NCBI ID   WP_048681817.1    Uniprot ID   A0AAW9N8U9
Organism   Peribacillus frigoritolerans strain Ant232     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3536161..3547876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO17_RS16740 - 3536345..3537701 (+) 1357 Protein_3270 IS1182 family transposase -
  LDO17_RS16745 spo0A 3538585..3539376 (-) 792 WP_034308269.1 sporulation transcription factor Spo0A -
  LDO17_RS16750 spoIVB 3539707..3540999 (-) 1293 WP_048681822.1 SpoIVB peptidase -
  LDO17_RS16755 recN 3541161..3542876 (-) 1716 WP_048681817.1 DNA repair protein RecN Machinery gene
  LDO17_RS16760 argR 3542899..3543348 (-) 450 WP_034308279.1 transcriptional regulator ArgR -
  LDO17_RS16765 - 3543669..3544496 (-) 828 WP_034308281.1 TlyA family RNA methyltransferase -
  LDO17_RS16770 dxs 3544501..3546393 (-) 1893 WP_048681832.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LDO17_RS16775 - 3546643..3547536 (-) 894 WP_048681813.1 polyprenyl synthetase family protein -
  LDO17_RS16780 - 3547538..3547771 (-) 234 WP_034308286.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64511.41 Da        Isoelectric Point: 5.2858

>NTDB_id=611768 LDO17_RS16755 WP_048681817.1 3541161..3542876(-) (recN) [Peribacillus frigoritolerans strain Ant232]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDEKHPVFAK
AEEFGLDMNDGMAILRRDISQSGKSVCRVNGKLVTISTLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIASAL
TEYQKLYKRYETASKQLNGLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKHSSETVSNSYFLLEEAVSNIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAAIEEEVEKLQNRETHIAKLEKEMKSIKADLIVEAKNLSELRQKFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIETEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=611768 LDO17_RS16755 WP_048681817.1 3541161..3542876(-) (recN) [Peribacillus frigoritolerans strain Ant232]
TTGTTAACAGAACTATCGATTAGGAATTTTGCGATCATAGACAGCCTGTCCGTTTCATTTGAGAAAGGCTTGACGGTCTT
GACAGGAGAAACAGGGGCAGGGAAGTCAATCATAATAGATGCCGTTCATCTCTTGGTTGGGGGCCGTGGTTCTGCAGAGT
TCATTCGGCATGGTGAGTCGAAGGCTGAAATAGAAGGACTATTCCAAATTGAAGATGAAAAACACCCGGTCTTTGCCAAA
GCGGAAGAGTTTGGCCTGGATATGAATGATGGGATGGCTATACTTCGAAGGGATATCTCACAGAGCGGTAAAAGCGTTTG
CAGGGTAAATGGGAAGCTGGTAACGATTTCCACATTACGTGAGATAGGGCGGACATTGATAGACATCCATGGTCAGCATG
AACATCAGGAATTAATGGATGAACGACTCCATCTTCCGCTGCTCGATCAATTTGGCGGTGAAAAAATCGCATCTGCACTC
ACTGAATACCAAAAGCTATATAAACGTTATGAAACGGCTTCTAAACAATTGAATGGTTTAAGCCAAAATGAACAGCAAAT
GGTCCATCGCCTTGATCTGATCCAATTTCAATTCGATGAAATCCAAAAAGCTGATTTGAAATTACGCGAAGATGAAGAAT
TGATGGAAGAACGGAAGAAAATTAATAATTTCGAAAAAATCCATGAAGCGCTGCAAACCAGTTATAATGCTTTAAATGGC
GAGCAGCATGCAATTGATTGGCTTTCCGTAGCCATGAATAATTTGGAGGAAGCGGCAGGGCTTGATGAAGGTTTAAAGCA
CAGCTCTGAAACCGTTTCAAATAGCTACTTCCTGCTCGAAGAGGCTGTGTCAAACATCCGGGACCAATTGGACTCTTTGG
ATTATGATACAGAACGTGTGGAATTCATTGAAAGTAGACTTAATGAAATAAATCAATTAAAGCGTAAATACGGGCGGACC
ATCGAGGAAATCCTGGAATATGGGGCCGCAATTGAAGAAGAAGTCGAAAAGCTGCAAAATAGGGAAACCCATATCGCGAA
GCTTGAAAAGGAAATGAAATCCATCAAGGCAGATCTAATCGTCGAAGCAAAGAATCTGTCTGAACTTCGCCAGAAATTCG
CTCAGCAGCTAACCAAAAAGATTCATCAGGAATTAAAGGATTTATATATGGAAAAAACAATTTTCGAACCTCATTTCCTT
CAGACAGCCTATACTTTCGATGAATTGTCAGATAGGGGCATTAATCAGTCAGGGCTGGATTCAATGGAATTTTATATTTC
CACCAATCCAGGTGAACCGTTAAAACCTCTTTCTAAAATCGCATCTGGTGGAGAACTGTCGAGGATCATGCTGGCTTTGA
AAAGTATTTTCTCCAAGCATCAAGGCATAACGTCCATTATATTTGATGAAGTGGATACAGGTGTAAGCGGACGGGTTGCC
CAATCCATTGCCGAAAAGATCTATAAAGTGGCAACTGGATCACAAGTATTGTGCATATCCCATTTGCCTCAGGTGGCAGC
CATGGCGGATACTCACCTTTTCATAGCGAAAAATGTAAGGGCCGGACGCACGAATACCTCGGTCAAGCCGCTAATTGAAA
CTGAAAAAATAAAAGAAATTGGCAGGATGATTTCGGGAGTAGAGATTACGGACTTGACGAAACAACATGCCAATGAATTA
ATCCAACTGGCCAAAAGGCTGAAGATTACATCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.764

100

0.613