Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NPO58_RS00725 Genome accession   NZ_CP101741
Coordinates   123752..125179 (+) Length   475 a.a.
NCBI ID   WP_001513843.1    Uniprot ID   -
Organism   Escherichia coli strain FY26     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 118752..130179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPO58_RS00685 (NPO58_00685) - 118927..119130 (+) 204 WP_304999686.1 DUF5983 family protein -
  NPO58_RS00690 (NPO58_00690) - 119164..119256 (+) 93 Protein_125 DUF957 domain-containing protein -
  NPO58_RS00695 (NPO58_00695) - 119545..119673 (-) 129 Protein_126 transposase domain-containing protein -
  NPO58_RS00700 (NPO58_00700) - 119745..119927 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  NPO58_RS00705 (NPO58_00705) tmaR 120028..120357 (-) 330 WP_000450409.1 DUF496 family protein -
  NPO58_RS00710 (NPO58_00710) yeeA 120529..121587 (-) 1059 WP_001200888.1 FUSC family protein -
  NPO58_RS00715 (NPO58_00715) sbmC 121785..122258 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  NPO58_RS00720 (NPO58_00720) dacD 122377..123543 (-) 1167 WP_001513842.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NPO58_RS00725 (NPO58_00725) sbcB 123752..125179 (+) 1428 WP_001513843.1 exodeoxyribonuclease I Machinery gene
  NPO58_RS00730 (NPO58_00730) tsuB 125222..125449 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NPO58_RS00735 (NPO58_00735) tsuA 125463..126521 (-) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  NPO58_RS00740 (NPO58_00740) plaP 126700..128058 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NPO58_RS00745 (NPO58_00745) yoeI 128048..128110 (-) 63 WP_010723108.1 membrane protein YoeI -
  NPO58_RS00750 (NPO58_00750) yeeY 128325..129254 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  NPO58_RS00755 (NPO58_00755) yeeZ 129300..130124 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54426.73 Da        Isoelectric Point: 5.4720

>NTDB_id=611686 NPO58_RS00725 WP_001513843.1 123752..125179(+) (sbcB) [Escherichia coli strain FY26]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFAPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=611686 NPO58_RS00725 WP_001513843.1 123752..125179(+) (sbcB) [Escherichia coli strain FY26]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCGCGCCAGAGTTTTTGCAGGGTTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581