Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LC814_RS08575 Genome accession   NZ_CP084528
Coordinates   1827079..1828188 (+) Length   369 a.a.
NCBI ID   WP_226063522.1    Uniprot ID   -
Organism   Kaistella polysaccharea strain GW4-15     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1822079..1833188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC814_RS08555 - 1822508..1824043 (+) 1536 WP_226063518.1 YifB family Mg chelatase-like AAA ATPase -
  LC814_RS08560 - 1824086..1824862 (-) 777 WP_226063519.1 DUF4382 domain-containing protein -
  LC814_RS08565 - 1825021..1826130 (-) 1110 WP_226063520.1 DUF3078 domain-containing protein -
  LC814_RS08570 - 1826280..1827050 (+) 771 WP_226063521.1 rhomboid family intramembrane serine protease -
  LC814_RS08575 dprA 1827079..1828188 (+) 1110 WP_226063522.1 DNA-processing protein DprA Machinery gene
  LC814_RS08580 gdhA 1828372..1829730 (+) 1359 WP_226063523.1 NADP-specific glutamate dehydrogenase -
  LC814_RS08585 - 1829889..1830383 (-) 495 WP_226063524.1 YkgJ family cysteine cluster protein -
  LC814_RS08590 - 1830600..1830983 (+) 384 WP_226063525.1 group III truncated hemoglobin -
  LC814_RS08595 - 1831037..1831747 (-) 711 WP_226063526.1 DNA alkylation repair protein -
  LC814_RS08600 - 1831748..1832662 (-) 915 WP_226065796.1 glutaminase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40836.66 Da        Isoelectric Point: 6.6949

>NTDB_id=611669 LC814_RS08575 WP_226063522.1 1827079..1828188(+) (dprA) [Kaistella polysaccharea strain GW4-15]
MHSEEIFYSIALRRCPLIGDVVFQKLINEAGSAKQVWELSKSGLQNIFGIGRKIALEIGNKEHLDFAENEIKFCEKHNIK
INLRHLGDLPALLNTCEDAPAILYQKGNIPTTQNNLSIVGTRNISSYGKNFIQDFLENINSQSVTTVSGLALGADSEVHQ
ASLVNSLPTIAVLAHGFHTLYPSKNRKLADKILSENGMLLTEFNSSQKPDRENFIQRNRVIAGLSPATIVVETAFGGGSI
STATFANNYNRDVYALPGRIDEKYSQGCNQLILQNKATAISTISGLIKELGYDKEKEKTGELFPSSEIKLLLPQNQQDIL
SLLHKTIPLSLDEISENLNLPSYKILPDLLQLEISGYIRALSGRQYLIL

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=611669 LC814_RS08575 WP_226063522.1 1827079..1828188(+) (dprA) [Kaistella polysaccharea strain GW4-15]
ATGCACTCCGAAGAGATTTTTTATTCCATTGCGTTACGACGTTGCCCACTTATTGGCGATGTCGTTTTCCAGAAGCTGAT
TAATGAAGCTGGATCGGCGAAACAGGTTTGGGAATTATCAAAATCAGGTCTGCAGAATATTTTTGGTATCGGCCGTAAAA
TTGCGCTGGAAATAGGAAATAAGGAACATCTGGATTTTGCCGAAAACGAAATTAAATTCTGCGAGAAACACAACATCAAA
ATAAATCTTCGTCATTTAGGCGATTTACCCGCGCTGCTAAACACCTGTGAAGACGCGCCGGCAATTCTCTATCAGAAAGG
AAATATTCCAACTACGCAGAACAATCTGAGTATTGTGGGAACCCGAAATATTTCTTCGTACGGCAAAAACTTTATCCAAG
ATTTTTTAGAGAATATCAATTCTCAAAGTGTAACCACGGTTAGTGGTTTAGCTTTAGGTGCTGATTCCGAAGTTCACCAG
GCGTCGCTTGTAAATTCTCTTCCGACTATTGCAGTACTCGCACATGGCTTTCACACACTTTACCCCTCTAAAAACCGAAA
ATTGGCAGATAAAATTTTATCTGAAAACGGAATGCTTTTAACAGAATTTAATTCTTCACAGAAACCAGACAGGGAAAATT
TTATTCAACGTAATCGAGTTATTGCAGGCTTGTCTCCCGCTACAATTGTCGTAGAAACTGCCTTTGGTGGTGGTTCCATC
AGCACGGCAACATTTGCCAATAATTACAATCGCGATGTTTATGCGTTGCCGGGCAGAATCGACGAAAAGTATAGCCAGGG
CTGCAACCAACTCATCCTTCAAAATAAAGCGACAGCGATATCTACAATTTCTGGATTGATTAAGGAGCTTGGCTATGACA
AAGAAAAGGAGAAGACGGGCGAATTATTTCCCTCCTCAGAAATAAAATTACTTTTACCTCAAAATCAACAGGATATTTTG
AGCCTACTTCATAAAACCATTCCGCTTTCTTTGGATGAAATATCAGAGAATTTAAACTTGCCATCTTATAAAATTTTACC
AGATCTTCTTCAACTTGAAATTTCGGGTTACATCCGAGCACTTTCGGGAAGACAATATTTAATTTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)

DprA winged helix domain (DprA_WH)

(314-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

55.285

100

0.553