Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NO473_RS08625 Genome accession   NZ_CP101666
Coordinates   1754085..1754690 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain M171-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1749085..1759690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NO473_RS08605 aes 1749122..1750081 (+) 960 WP_063501955.1 acetyl esterase -
  NO473_RS08610 hemH 1750078..1751040 (-) 963 WP_001250088.1 ferrochelatase -
  NO473_RS08615 adk 1751276..1751920 (-) 645 WP_001220233.1 adenylate kinase -
  NO473_RS08620 htpG 1752101..1753975 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  NO473_RS08625 recR 1754085..1754690 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  NO473_RS08630 ybaB 1754690..1755019 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  NO473_RS08635 dnaX 1755072..1757003 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  NO473_RS08640 apt 1757132..1757683 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  NO473_RS08645 ybaN 1757836..1758213 (-) 378 WP_001188905.1 DUF454 family protein -
  NO473_RS08650 priC 1758283..1758810 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  NO473_RS08655 rsmS 1758824..1758985 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=611543 NO473_RS08625 WP_001195025.1 1754085..1754690(-) (recR) [Escherichia coli strain M171-1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=611543 NO473_RS08625 WP_001195025.1 1754085..1754690(-) (recR) [Escherichia coli strain M171-1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443