Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   NO220_RS19005 Genome accession   NZ_CP101661
Coordinates   3839980..3840774 (-) Length   264 a.a.
NCBI ID   WP_004393110.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B408     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3834980..3845774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NO220_RS18985 (NO220_18985) - 3835364..3836371 (-) 1008 WP_014306163.1 ThiF family adenylyltransferase -
  NO220_RS18990 (NO220_18990) - 3836603..3838021 (-) 1419 WP_230639699.1 cell wall metabolism sensor histidine kinase WalK -
  NO220_RS18995 (NO220_18995) - 3838018..3838230 (-) 213 WP_004393115.1 winged helix-turn-helix domain-containing protein -
  NO220_RS19000 (NO220_19000) htrA 3838697..3839893 (-) 1197 WP_015387437.1 S1C family serine protease Regulator
  NO220_RS19005 (NO220_19005) vicX 3839980..3840774 (-) 795 WP_004393110.1 MBL fold metallo-hydrolase Regulator
  NO220_RS19010 (NO220_19010) - 3840789..3841628 (-) 840 WP_004393108.1 two-component system regulatory protein YycI -
  NO220_RS19015 (NO220_19015) yycH 3841615..3842973 (-) 1359 WP_004393107.1 two-component system activity regulator YycH -
  NO220_RS19020 (NO220_19020) walK 3842963..3844798 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  NO220_RS19025 (NO220_19025) walR 3844805..3845512 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29144.22 Da        Isoelectric Point: 6.0280

>NTDB_id=611519 NO220_RS19005 WP_004393110.1 3839980..3840774(-) (vicX) [Bacillus amyloliquefaciens strain B408]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMERIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=611519 NO220_RS19005 WP_004393110.1 3839980..3840774(-) (vicX) [Bacillus amyloliquefaciens strain B408]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCATTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAGAATCGGCCGCAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTACCCGTCTACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTTGATACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTGAAATCTTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTTTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGATATGTGAGCGACAGAATGAAAGGCATCATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGACGTCGGCATGCTGCAAATGGGCAGATACCCTTGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCGAATGAAGATGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCGGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATTCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527