Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   BASU_RS20430 Genome accession   NC_022081
Coordinates   354689..354853 (+) Length   54 a.a.
NCBI ID   WP_272949499.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5113     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 349689..359853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BASU_RS20425 srfAB 351634..354624 (+) 2991 Protein_316 surfactin non-ribosomal peptide synthetase SrfAB -
  BASU_RS20430 comS 354689..354853 (+) 165 WP_272949499.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6180.18 Da        Isoelectric Point: 12.0559

>NTDB_id=61151 BASU_RS20430 WP_272949499.1 354689..354853(+) (comS) [Bacillus velezensis UCMB5113]
MRARRSSSLNRSDKRLIRSIILFPQHNAGCISLISSDRPARATTSLLYFCWKGQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=61151 BASU_RS20430 WP_272949499.1 354689..354853(+) (comS) [Bacillus velezensis UCMB5113]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAA
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTCTGCTGGAAGGGTC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

59.091

81.481

0.481

Multiple sequence alignment