Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NO220_RS14770 Genome accession   NZ_CP101661
Coordinates   3005369..3006013 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain B408     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3000369..3011013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NO220_RS14735 (NO220_14735) - 3001554..3001985 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  NO220_RS14740 (NO220_14740) - 3001985..3002326 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  NO220_RS14745 (NO220_14745) - 3002319..3003800 (+) 1482 WP_043867375.1 Na+/H+ antiporter subunit D -
  NO220_RS14750 (NO220_14750) - 3003806..3004282 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  NO220_RS14755 (NO220_14755) - 3004282..3004566 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  NO220_RS14760 (NO220_14760) mnhG 3004550..3004924 (+) 375 WP_046560012.1 monovalent cation/H(+) antiporter subunit G -
  NO220_RS14765 (NO220_14765) - 3004964..3005347 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  NO220_RS14770 (NO220_14770) comA 3005369..3006013 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  NO220_RS14775 (NO220_14775) comP 3006094..3008397 (-) 2304 WP_003152050.1 histidine kinase Regulator
  NO220_RS14780 (NO220_14780) comX 3008417..3008596 (-) 180 WP_306383677.1 competence pheromone ComX Regulator
  NO220_RS14785 (NO220_14785) comQ 3008550..3009536 (-) 987 WP_269321599.1 class 1 isoprenoid biosynthesis enzyme Regulator
  NO220_RS14790 (NO220_14790) degQ 3009667..3009807 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  NO220_RS14795 (NO220_14795) - 3010273..3010614 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=611491 NO220_RS14770 WP_003152052.1 3005369..3006013(-) (comA) [Bacillus amyloliquefaciens strain B408]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=611491 NO220_RS14770 WP_003152052.1 3005369..3006013(-) (comA) [Bacillus amyloliquefaciens strain B408]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864