Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LE197_RS22155 Genome accession   NZ_CP084484
Coordinates   4609340..4609897 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas sp. PS1(2021)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4604340..4614897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LE197_RS22135 (LE197_22130) pilR 4605616..4606953 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  LE197_RS22140 (LE197_22135) thiO 4606999..4608093 (-) 1095 WP_023108762.1 glycine oxidase ThiO -
  LE197_RS22145 (LE197_22140) - 4608228..4608737 (+) 510 WP_017002065.1 Tfp pilus assembly protein FimT/FimU -
  LE197_RS22150 (LE197_22145) - 4608843..4609349 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  LE197_RS22155 (LE197_22150) pilV 4609340..4609897 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  LE197_RS22160 (LE197_22155) pilW 4609894..4610718 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  LE197_RS22165 (LE197_22160) pilX 4610715..4611302 (+) 588 WP_196679323.1 type 4a pilus minor pilin PilX -
  LE197_RS22170 (LE197_22165) pilY1 4611314..4614805 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=611444 LE197_RS22155 WP_003119423.1 4609340..4609897(+) (pilV) [Pseudomonas sp. PS1(2021)]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=611444 LE197_RS22155 WP_003119423.1 4609340..4609897(+) (pilV) [Pseudomonas sp. PS1(2021)]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995