Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   NO220_RS05310 Genome accession   NZ_CP101661
Coordinates   1025566..1028958 (+) Length   1130 a.a.
NCBI ID   WP_043866971.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B408     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1020566..1033958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NO220_RS05300 (NO220_05300) addA 1020628..1024332 (+) 3705 WP_043867621.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  NO220_RS05305 (NO220_05305) sbcD 1024397..1025569 (+) 1173 WP_003155146.1 exonuclease subunit SbcD -
  NO220_RS05310 (NO220_05310) sbcC 1025566..1028958 (+) 3393 WP_043866971.1 exonuclease subunit SbcC Machinery gene
  NO220_RS05315 (NO220_05315) - 1028974..1029267 (+) 294 WP_003155144.1 hypothetical protein -
  NO220_RS05320 (NO220_05320) - 1029311..1029529 (-) 219 WP_003155143.1 spore germination protein -
  NO220_RS05325 (NO220_05325) - 1029569..1029964 (-) 396 WP_003155142.1 spore germination protein GerPE -
  NO220_RS05330 (NO220_05330) - 1029964..1030140 (-) 177 WP_003155141.1 hypothetical protein -
  NO220_RS05335 (NO220_05335) - 1030137..1030754 (-) 618 WP_003155139.1 spore germination protein GerPC -
  NO220_RS05340 (NO220_05340) - 1030790..1031026 (-) 237 WP_003155138.1 spore germination protein GerPB -
  NO220_RS05345 (NO220_05345) - 1031039..1031260 (-) 222 WP_003155135.1 spore germination protein -
  NO220_RS05350 (NO220_05350) - 1031451..1031660 (-) 210 WP_003155132.1 aspartyl-phosphate phosphatase Spo0E family protein -
  NO220_RS05355 (NO220_05355) - 1031876..1032781 (+) 906 WP_014417375.1 fumarylacetoacetate hydrolase family protein -
  NO220_RS05360 (NO220_05360) - 1032875..1033231 (+) 357 WP_003155128.1 YisL family protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128314.37 Da        Isoelectric Point: 5.6110

>NTDB_id=611413 NO220_RS05310 WP_043866971.1 1025566..1028958(+) (sbcC) [Bacillus amyloliquefaciens strain B408]
MKPILLTIKGLHSFREEQTIDFAGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDQLAVSFTF
ALQSGHRVSYKVERVFKRTDETKVKTALCRLIEIKDEQTVLADKANEVNKKVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRRAQEAAAKKNEMLAEQSGLGDAGEDALKQAEQQFHEANERLEAAEKKRVRAK
ERFENHQEIWNLQTERDEYERREKKLEERRPYITDLTERLKEAETALALEPYADRCTEAVRRKQRAEQEHELAKRKSEAE
TVSFTRQNEAYEAWRAHKAEQEPKLVKEEELYQRLSVIEQKLLEAKKEAEKTNAEHSKKEEEYEAASKQLAAVKDRLTRG
QNRQNELKEELKAVQVTADERKKCQTAAQLAAGFQQTQEQITKERANLTTQLKNVEKLNGESESLTAKAKTEEEDITRAY
QTLQTVYHMVCETERSLKAAAERAEKTQADLRRRSEEARTAALTKELSEKLIEGKPCPVCGSTQHDRPRSAHETFSPDTA
VQEHLQQVEALLSEAAALSQEVLTAKVALEEQSGRFTEECPFLQSARVPELEAASSISGRPLDEAFSAVRLEWKQMKQDM
LSVKEKVTRLISAHQQTVKQAEQLAERIRYEEKEADRLRHSLEELESLSESRLNQYNEVCGDIPPNRIDAWQASIDEKDR
QAEECEKRIETSIAFLKEHEEEKERLQEMKHRLERERLELHYASERLQQVIDGYEQELGTAAEETSVSAKLEAVRQELQL
LKSKEQSLFDALKQAQQSLNDAKGRESGSLMSLRDAEASLEKAQNDWRVRSQDTRFTEPDQVKKSLLPQGRAEEMKKEID
EFLDTSKQLSANISRVTDKLAERRISEEEWTASVSLLKQAEAESGAAMEEKGAQAKAFAVMQKQHKRFKEIEAELKNWQT
QIDRLDKLQSVCKGNTFVEFLAEEQLESVARDASARLGALTRQRYAILVDSEGGFVMRDDANGGVKRPVSSLSGGETFLT
SLSLALALSAQIQLRGQYPLQFFFLDEGFGTLDQGLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPSEPGG
KGTRVTLEIM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=611413 NO220_RS05310 WP_043866971.1 1025566..1028958(+) (sbcC) [Bacillus amyloliquefaciens strain B408]
ATGAAGCCGATTCTGTTAACGATAAAAGGGCTCCACAGCTTCAGGGAGGAACAGACCATTGATTTTGCCGGACTGTCAGG
AGCCGGGGTGTTCGGGATTTTCGGGCCGACCGGAAGCGGAAAATCGTCGATCCTTGATGCCATGACACTCGCTTTATACG
GAAAAGTGGAGCGCGCCGCAAATAATACGCACGGCATTCTGAATCATGCCGAAGATCAGCTTGCCGTCTCATTTACATTC
GCGCTTCAATCCGGCCACCGGGTTTCCTACAAGGTCGAGCGCGTTTTTAAGAGAACGGATGAAACGAAAGTAAAAACCGC
CCTCTGCCGGCTGATTGAAATCAAAGACGAACAAACAGTGCTGGCCGATAAAGCGAATGAAGTGAACAAAAAGGTAGAGG
AGCTTCTTGGCCTGACCATTGACGACTTTACAAGAGCCGTCGTGCTGCCGCAAGGAAAGTTTGCCGAGTTTCTGTCGCTT
AAAGGTGCGGAAAGAAGACATATGCTCCAGCGCCTGTTTAATCTGGAACAGTACGGGGACAGGCTTGTCAAAAAATTGCG
GCGGCGGGCGCAGGAAGCGGCAGCGAAAAAAAATGAAATGCTGGCCGAACAATCCGGCCTCGGAGACGCAGGAGAAGATG
CGCTGAAGCAGGCTGAACAGCAGTTTCACGAAGCGAACGAACGGCTTGAAGCAGCTGAGAAGAAACGGGTCCGGGCAAAA
GAGCGTTTTGAAAATCACCAGGAAATTTGGAACTTGCAGACAGAAAGAGATGAATATGAGCGCCGGGAGAAAAAGCTTGA
GGAAAGACGCCCGTACATCACGGATTTGACTGAGCGTCTTAAAGAGGCGGAAACAGCTCTCGCCCTTGAGCCGTACGCAG
ACCGCTGCACCGAAGCCGTCCGCCGGAAGCAGCGCGCCGAACAGGAACACGAACTGGCCAAACGGAAATCAGAGGCGGAA
ACCGTTTCATTTACCCGGCAAAATGAAGCCTATGAAGCATGGCGCGCCCATAAGGCCGAACAGGAGCCGAAACTTGTCAA
GGAAGAAGAGCTGTATCAAAGACTTTCAGTCATTGAACAAAAACTGCTTGAAGCGAAAAAAGAAGCGGAAAAAACAAATG
CGGAGCACAGCAAAAAAGAGGAAGAATACGAAGCCGCCTCGAAACAGCTGGCCGCAGTGAAAGACCGCCTGACCCGCGGC
CAAAACAGGCAGAATGAGCTGAAAGAAGAGCTGAAAGCAGTTCAAGTGACCGCCGATGAACGGAAAAAATGCCAGACCGC
AGCACAGCTGGCGGCGGGCTTTCAGCAGACACAGGAACAAATCACGAAAGAGCGGGCCAATCTGACAACGCAGCTGAAAA
ACGTGGAGAAGCTCAACGGAGAAAGCGAGTCGCTCACAGCGAAAGCGAAAACGGAAGAGGAAGACATTACGCGCGCTTAT
CAAACGCTGCAAACCGTTTACCATATGGTCTGTGAAACGGAACGTTCACTGAAAGCCGCAGCCGAACGGGCTGAAAAAAC
GCAAGCCGATCTCCGCAGGCGCTCAGAGGAAGCGAGAACGGCTGCATTAACAAAAGAATTATCGGAAAAACTGATCGAAG
GAAAGCCTTGTCCTGTATGCGGCTCTACGCAGCATGACCGCCCGCGTTCCGCTCATGAAACATTCTCGCCTGATACCGCT
GTGCAGGAACATTTGCAGCAGGTGGAAGCACTGCTTTCTGAGGCGGCGGCTCTTTCTCAGGAAGTGCTGACAGCCAAGGT
TGCATTAGAAGAACAGTCGGGGCGTTTTACCGAAGAATGTCCGTTTCTGCAAAGCGCCCGGGTTCCGGAGCTGGAAGCCG
CTTCTTCCATCAGCGGACGCCCGCTTGATGAAGCGTTCAGCGCCGTCCGCTTGGAATGGAAACAAATGAAACAGGATATG
CTGTCGGTAAAAGAGAAGGTCACAAGACTGATCAGCGCGCATCAGCAGACGGTAAAACAAGCTGAGCAGCTTGCCGAACG
AATCCGCTACGAGGAAAAAGAAGCCGACCGTCTCAGACATTCATTAGAAGAGCTTGAATCGCTGTCAGAAAGCCGATTGA
ATCAGTACAACGAAGTCTGCGGTGATATTCCGCCAAACCGGATTGACGCCTGGCAGGCTTCGATAGATGAGAAGGACAGG
CAGGCAGAAGAATGTGAGAAGCGCATTGAAACAAGCATCGCATTCCTCAAGGAACATGAAGAGGAGAAAGAACGCCTGCA
GGAGATGAAGCATCGGCTTGAACGGGAACGGCTCGAGCTTCACTATGCGTCTGAGCGCCTGCAGCAGGTGATTGACGGAT
ATGAACAAGAGCTCGGAACAGCAGCTGAAGAAACATCAGTTTCCGCAAAGCTTGAAGCGGTGCGGCAGGAATTACAGCTG
TTAAAATCAAAAGAACAGTCCCTATTCGATGCGCTGAAGCAGGCGCAGCAATCACTGAATGACGCAAAAGGCCGGGAATC
AGGGAGTCTCATGTCACTCAGGGATGCTGAGGCCTCTCTTGAGAAAGCGCAAAACGACTGGCGCGTGAGGTCACAAGACA
CCAGGTTTACCGAACCGGACCAAGTTAAAAAAAGTCTGCTTCCGCAAGGGCGTGCAGAGGAAATGAAAAAAGAAATTGAT
GAGTTTCTGGACACCTCAAAACAGCTATCGGCAAATATCAGCCGTGTTACTGATAAATTAGCCGAGCGCCGGATATCGGA
GGAAGAATGGACAGCATCCGTTTCTCTGCTGAAGCAGGCAGAGGCTGAGTCAGGCGCCGCCATGGAGGAAAAAGGAGCAC
AGGCAAAAGCCTTCGCGGTTATGCAAAAACAGCATAAGCGCTTTAAAGAGATTGAAGCCGAACTGAAAAACTGGCAGACA
CAGATTGACAGGCTAGATAAGCTCCAGTCTGTATGTAAAGGCAATACATTCGTCGAATTTTTAGCGGAAGAACAGCTGGA
AAGTGTGGCTCGGGACGCCTCTGCCCGTCTCGGAGCGCTGACAAGGCAGCGGTATGCCATATTAGTCGATTCAGAAGGCG
GTTTCGTCATGCGTGATGACGCGAACGGAGGCGTCAAACGGCCCGTATCAAGCCTTTCCGGCGGGGAGACGTTTCTGACA
TCGCTGTCGCTTGCGCTTGCCTTGTCCGCCCAGATTCAGCTGCGGGGGCAATACCCGCTGCAATTCTTTTTCTTAGATGA
AGGATTCGGGACTCTTGACCAAGGGCTCTTAGACACCGTTGTCACAGCGCTCGAAAAGCTGCAATCGGACAACTTATCCG
TCGGAGTGATCAGCCATGTGCAGGAGCTGAGAGCGCGTCTGCCGAAAAAATTAATCGTTCATCCGTCCGAACCGGGCGGG
AAAGGCACCCGGGTCACATTGGAGATCATGTAG

Domains

Predicted by InterProScan.

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1017-1085)

AAA domain (AAA_23)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

64.317

100

0.646