Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   LE167_RS11640 Genome accession   NZ_CP084443
Coordinates   2438531..2439196 (-) Length   221 a.a.
NCBI ID   WP_002460617.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain RMLUG5     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2433531..2444196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LE167_RS11615 (LE167_11630) - 2433721..2434200 (-) 480 WP_002478517.1 DUF4064 domain-containing protein -
  LE167_RS11620 (LE167_11635) - 2434287..2434736 (-) 450 WP_002478516.1 DUF4064 domain-containing protein -
  LE167_RS11625 (LE167_11640) - 2434778..2436739 (-) 1962 WP_225307314.1 FtsX-like permease family protein -
  LE167_RS11630 (LE167_11645) - 2436762..2437511 (-) 750 WP_002478514.1 ABC transporter ATP-binding protein -
  LE167_RS11635 (LE167_11650) braS 2437617..2438525 (-) 909 WP_002478513.1 sensor histidine kinase Regulator
  LE167_RS11640 (LE167_11655) braR 2438531..2439196 (-) 666 WP_002460617.1 response regulator transcription factor Regulator
  LE167_RS12515 - 2439412..2439516 (-) 105 Protein_2256 hypothetical protein -
  LE167_RS11650 (LE167_11665) - 2439735..2441183 (+) 1449 WP_002478511.1 alkaline phosphatase -
  LE167_RS11655 (LE167_11670) wecB 2441369..2442508 (-) 1140 WP_002478510.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -
  LE167_RS11660 (LE167_11675) - 2442551..2443822 (-) 1272 WP_002478509.1 nucleotide sugar dehydrogenase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25798.73 Da        Isoelectric Point: 4.6843

>NTDB_id=611361 LE167_RS11640 WP_002460617.1 2438531..2439196(-) (braR) [Staphylococcus lugdunensis strain RMLUG5]
MRIMIVEDDVVIRESLAGELMKWNYDVVAVDTFDDIVSWFVKYEPDLVLLDINLPTLNGFHWCQEIRKSSNVPIIFISSR
TDNMDQIMAIQMGGDDFIEKPFNLSLTITKIQALLRRTYDLTVNHNETTVRDCKLIIDEATLYYKEESVHLSFTELQIIK
MLFDNQGKYVSRTALIEKCWESEHFIDDNTLAVNMTRLRKKLNSIGLEDFIETKKNIGYKV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=611361 LE167_RS11640 WP_002460617.1 2438531..2439196(-) (braR) [Staphylococcus lugdunensis strain RMLUG5]
ATGAGGATTATGATTGTTGAGGATGATGTTGTGATTCGCGAGAGTTTGGCTGGTGAACTGATGAAGTGGAATTATGATGT
GGTTGCTGTAGATACCTTTGATGATATTGTGTCTTGGTTCGTAAAGTATGAACCAGATTTAGTGTTGTTGGACATTAATT
TACCTACATTGAATGGATTTCACTGGTGCCAAGAAATTCGCAAATCGTCAAATGTACCAATTATTTTTATTAGCTCACGC
ACGGATAATATGGATCAGATTATGGCGATACAAATGGGTGGAGATGACTTTATAGAAAAACCATTTAATCTGTCATTGAC
CATAACAAAGATTCAAGCTTTGCTTCGTCGAACTTATGATTTAACTGTGAATCATAATGAAACGACAGTTCGTGACTGTA
AGTTGATTATTGATGAAGCAACGCTTTATTACAAAGAAGAATCGGTACATTTATCATTTACAGAGTTACAAATTATTAAA
ATGCTGTTTGATAATCAAGGTAAATATGTCAGTCGCACAGCGTTAATTGAAAAATGCTGGGAGTCTGAACACTTTATTGA
TGACAATACGCTTGCGGTAAATATGACACGCTTACGCAAAAAACTTAATTCTATAGGGCTTGAAGATTTTATTGAAACAA
AAAAGAATATAGGATATAAGGTTTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)

Response regulator receiver domain (Response_reg)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

76.923

100

0.769