Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   LE164_RS11565 Genome accession   NZ_CP084440
Coordinates   2446294..2447010 (+) Length   238 a.a.
NCBI ID   WP_267262609.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain RMLUG4     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2441294..2452010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LE164_RS11540 (LE164_11555) - 2442087..2442710 (+) 624 WP_002461413.1 nitroreductase family protein -
  LE164_RS11545 (LE164_11560) - 2442845..2443630 (+) 786 WP_002477923.1 nitrilase-related carbon-nitrogen hydrolase -
  LE164_RS11550 (LE164_11565) - 2444258..2444824 (+) 567 WP_002477922.1 accessory gene regulator AgrB -
  LE164_RS11555 (LE164_11570) - 2444827..2444970 (+) 144 WP_002477921.1 cyclic lactone autoinducer peptide -
  LE164_RS11560 (LE164_11575) - 2444992..2446281 (+) 1290 WP_002477920.1 GHKL domain-containing protein -
  LE164_RS11565 (LE164_11580) agrA 2446294..2447010 (+) 717 WP_267262609.1 LytTR family DNA-binding domain-containing protein Regulator
  LE164_RS11570 (LE164_11585) - 2447102..2448076 (-) 975 WP_002477919.1 carbohydrate kinase -
  LE164_RS11575 (LE164_11590) - 2448077..2449561 (-) 1485 WP_002477918.1 sucrose-6-phosphate hydrolase -
  LE164_RS11580 (LE164_11595) - 2449661..2450611 (-) 951 WP_002461422.1 LacI family DNA-binding transcriptional regulator -
  LE164_RS11585 (LE164_11600) - 2450711..2451955 (-) 1245 WP_002477917.1 ammonium transporter -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27958.96 Da        Isoelectric Point: 6.0950

>NTDB_id=611323 LE164_RS11565 WP_267262609.1 2446294..2447010(+) (agrA) [Staphylococcus lugdunensis strain RMLUG4]
MKIYICEDDVKQRENMVEIINHYIMIEEKPMEIALATDNPYEILKMSKENEDVGCYFLDIQLEADINGIKLGSEIRKYDP
IGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDPAELKTRIIDCLETAHTRLKLLSKERTVETIELKRGSNSVYVQYDEVM
FFESSTNSHRLIAHLDNRQIEFYGNLKQISQIDDRFFRCHNSFVVNRHNISSINSKERVVYFKNGEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=611323 LE164_RS11565 WP_267262609.1 2446294..2447010(+) (agrA) [Staphylococcus lugdunensis strain RMLUG4]
ATGAAGATTTACATTTGTGAAGATGATGTTAAACAACGTGAAAATATGGTTGAGATCATCAATCACTATATCATGATTGA
AGAAAAACCAATGGAAATTGCTTTAGCTACAGATAATCCTTATGAAATTTTAAAAATGTCAAAGGAAAATGAGGATGTTG
GTTGTTATTTTTTAGATATTCAATTAGAAGCTGACATAAACGGTATCAAGTTAGGTAGCGAAATAAGAAAGTATGATCCG
ATAGGTAACATAATTTTTGTTACAAGTCATAGTGAGCTGACATATTTAACTTTTGTTTACAAAGTATCGGCTATGGATTT
TATTTTTAAAGATGACCCTGCCGAACTTAAAACTCGTATTATCGATTGCCTTGAAACCGCACATACGCGCTTAAAGTTAT
TGTCAAAAGAACGTACCGTTGAAACGATAGAGCTTAAGCGCGGTAGTAATTCTGTATATGTGCAATATGATGAAGTGATG
TTTTTTGAATCATCAACAAATTCACATCGATTGATTGCACATTTAGATAATCGTCAAATTGAGTTTTATGGTAATCTAAA
ACAAATTAGTCAAATCGATGATCGTTTCTTTAGATGCCATAATAGTTTTGTTGTCAATCGACACAATATCTCTTCAATCA
ATTCAAAAGAACGTGTTGTATATTTTAAAAATGGTGAACATTGTTATGCATCAGTACGCAATGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

86.134

100

0.861