Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   EL271_RS06535 Genome accession   NZ_AP018937
Coordinates   1221753..1222322 (-) Length   189 a.a.
NCBI ID   WP_073177105.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain HU-OH     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1216753..1227322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL271_RS06500 (SPOH_1204) - 1217071..1218006 (+) 936 WP_000401770.1 DHH family phosphoesterase -
  EL271_RS06505 (SPOH_1205) - 1218102..1218344 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  EL271_RS06510 (SPOH_1206) - 1218401..1218619 (-) 219 WP_000028151.1 hypothetical protein -
  EL271_RS06515 - 1218616..1219192 (-) 577 Protein_1223 transposase -
  EL271_RS06520 (SPOH_1208) gdhA 1219728..1221074 (+) 1347 WP_000199536.1 NADP-specific glutamate dehydrogenase -
  EL271_RS06530 (SPOH_1209) - 1221570..1221740 (-) 171 WP_000711943.1 hypothetical protein -
  EL271_RS06535 (SPOH_1210) comA 1221753..1222322 (-) 570 WP_073177105.1 ATP-binding cassette domain-containing protein Regulator
  EL271_RS06540 - 1222348..1223156 (-) 809 Protein_1227 IS5 family transposase -
  EL271_RS12175 - 1223412..1224458 (+) 1047 Protein_1228 IS630 family transposase -
  EL271_RS06560 (SPOH_1215) - 1224692..1225144 (-) 453 Protein_1229 hypothetical protein -
  EL271_RS06565 (SPOH_1217) - 1225146..1225433 (-) 288 WP_000869751.1 hypothetical protein -
  EL271_RS06575 (SPOH_1218) - 1226227..1226364 (-) 138 WP_000807141.1 hypothetical protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 21076.50 Da        Isoelectric Point: 8.4331

>NTDB_id=61114 EL271_RS06535 WP_073177105.1 1221753..1222322(-) (comA) [Streptococcus pneumoniae strain HU-OH]
MPSGLYKIDTGKVLFDGVNINQIDKKILSQNLGVVPQDSFLLNRSILDNITLKHEVTSQKIEEVCKAVQIYDEIMAMPMK
FNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIKSQGCTQIIVAHRLSTIKDADIIVVM
KGGKIVESGNHKYLMDLGGEYYSLYTKRK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=61114 EL271_RS06535 WP_073177105.1 1221753..1222322(-) (comA) [Streptococcus pneumoniae strain HU-OH]
ATACCATCAGGATTATATAAGATTGATACAGGAAAAGTTTTATTTGATGGTGTAAATATTAATCAAATAGATAAAAAAAT
ATTAAGTCAAAATTTAGGAGTAGTTCCACAGGATTCGTTTTTATTGAACAGAAGTATTCTTGATAACATAACTTTAAAGC
ACGAAGTTACTTCACAAAAGATAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAA
TTTAATACTATCATCTCAGAGATGGGTTCAAATATTTCAGGTGGTCAAAGACAACGGATAGCACTGGCACGTGCATTAAT
AAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCTTTAGACACTATTAATGAGGAAAGAATAACAAAGTATA
TAAAAAGTCAGGGCTGTACTCAAATAATTGTAGCTCATAGATTGTCAACGATTAAGGATGCGGATATTATTGTTGTAATG
AAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGGATCTTGGTGGAGAGTACTACAGCTTATATACAAA
AAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

42.473

98.413

0.418
  comA Streptococcus gordonii str. Challis substr. CH1

42.391

97.354

0.413
  comA Streptococcus mitis SK321

41.935

98.413

0.413
  comA/nlmT Streptococcus mutans UA159

41.848

97.354

0.407
  comA Streptococcus pneumoniae R6

41.398

98.413

0.407
  comA Streptococcus pneumoniae D39

41.398

98.413

0.407
  comA Streptococcus pneumoniae Rx1

41.398

98.413

0.407
  comA Streptococcus pneumoniae TIGR4

40.323

98.413

0.397

Multiple sequence alignment