Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BASU_RS10395 Genome accession   NC_022081
Coordinates   2130159..2130767 (+) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus velezensis UCMB5113     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2125159..2135767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BASU_RS10355 (BASU_1967) - 2126245..2126751 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  BASU_RS10360 (BASU_1968) - 2126890..2127303 (+) 414 WP_017418017.1 hypothetical protein -
  BASU_RS10365 (BASU_1969) - 2127333..2127734 (-) 402 WP_020955979.1 YppG family protein -
  BASU_RS10370 (BASU_1970) - 2127921..2128103 (+) 183 WP_003153532.1 YppF family protein -
  BASU_RS10375 (BASU_1971) - 2128142..2128510 (-) 369 WP_007409492.1 YppE family protein -
  BASU_RS10380 (BASU_1972) - 2128556..2128801 (-) 246 WP_007409491.1 DUF5446 family protein -
  BASU_RS10385 sspM 2129007..2129111 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  BASU_RS10390 (BASU_1973) - 2129155..2130117 (-) 963 WP_020955980.1 DUF2515 domain-containing protein -
  BASU_RS10395 (BASU_1974) recU 2130159..2130767 (+) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  BASU_RS10400 (BASU_1975) - 2130806..2133589 (+) 2784 WP_020955981.1 PBP1A family penicillin-binding protein -
  BASU_RS10405 (BASU_1976) - 2133666..2134157 (-) 492 WP_020955982.1 YpoC family protein -
  BASU_RS10410 (BASU_1977) nth 2134154..2134813 (-) 660 WP_007612187.1 endonuclease III -
  BASU_RS10415 (BASU_1978) dnaD 2134832..2135530 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=61112 BASU_RS10395 WP_012117837.1 2130159..2130767(+) (recU) [Bacillus velezensis UCMB5113]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=61112 BASU_RS10395 WP_012117837.1 2130159..2130767(+) (recU) [Bacillus velezensis UCMB5113]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment