Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BASU_RS08290 Genome accession   NC_022081
Coordinates   1599293..1600192 (+) Length   299 a.a.
NCBI ID   WP_020955817.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5113     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1594293..1605192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BASU_RS08270 (BASU_1546) - 1594983..1596686 (+) 1704 WP_020955816.1 hypothetical protein -
  BASU_RS08275 (BASU_1547) - 1596683..1596964 (+) 282 WP_015239847.1 FlhB-like flagellar biosynthesis protein -
  BASU_RS08280 (BASU_1548) sucC 1597139..1598296 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  BASU_RS08285 (BASU_1549) sucD 1598325..1599227 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  BASU_RS08290 (BASU_1550) dprA 1599293..1600192 (+) 900 WP_020955817.1 DNA-processing protein DprA Machinery gene
  BASU_RS08295 (BASU_1551) topA 1600374..1602449 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  BASU_RS08300 (BASU_1552) trmFO 1602514..1603821 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BASU_RS08305 (BASU_1553) xerC 1603891..1604808 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32836.95 Da        Isoelectric Point: 7.5071

>NTDB_id=61107 BASU_RS08290 WP_020955817.1 1599293..1600192(+) (dprA) [Bacillus velezensis UCMB5113]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFQEIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=61107 BASU_RS08290 WP_020955817.1 1599293..1600192(+) (dprA) [Bacillus velezensis UCMB5113]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCAGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCTAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGATTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Lactococcus lactis subsp. cremoris KW2

42.045

88.294

0.371

Multiple sequence alignment