Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BASU_RS07335 Genome accession   NC_022081
Coordinates   1364868..1365464 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5113     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1359868..1370464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BASU_RS07305 (BASU_1356) - 1360080..1360535 (+) 456 WP_020955747.1 flavodoxin -
  BASU_RS07310 (BASU_1357) dapD 1360617..1361327 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  BASU_RS07315 (BASU_1358) - 1361398..1362522 (+) 1125 WP_007409624.1 N-acetyldiaminopimelate deacetylase -
  BASU_RS07320 (BASU_1359) - 1362583..1362828 (+) 246 WP_003154596.1 YkuS family protein -
  BASU_RS07325 (BASU_1360) - 1362862..1363668 (-) 807 WP_020955748.1 mechanosensitive ion channel family protein -
  BASU_RS07330 (BASU_1361) - 1363957..1364415 (+) 459 WP_007409626.1 TlpA disulfide reductase family protein -
  BASU_RS07335 (BASU_1362) rok 1364868..1365464 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  BASU_RS07340 (BASU_1363) - 1365485..1366477 (-) 993 WP_007409627.1 hypothetical protein -
  BASU_RS07345 (BASU_1364) - 1366623..1367225 (+) 603 WP_020955749.1 molybdenum cofactor guanylyltransferase -
  BASU_RS07350 (BASU_1365) - 1367277..1368296 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  BASU_RS07355 (BASU_1366) glp 1368314..1369606 (+) 1293 WP_020955750.1 gephyrin-like molybdotransferase Glp -
  BASU_RS07360 (BASU_1367) mobB 1369567..1370088 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=61105 BASU_RS07335 WP_003154591.1 1364868..1365464(+) (rok) [Bacillus velezensis UCMB5113]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=61105 BASU_RS07335 WP_003154591.1 1364868..1365464(+) (rok) [Bacillus velezensis UCMB5113]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment