Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   EL271_RS05875 Genome accession   NZ_AP018937
Coordinates   1091857..1092927 (+) Length   356 a.a.
NCBI ID   WP_000817890.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain HU-OH     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1086857..1097927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL271_RS05860 (SPOH_1072) ylqF 1088090..1088941 (+) 852 WP_000201299.1 ribosome biogenesis GTPase YlqF -
  EL271_RS05865 (SPOH_1073) - 1088928..1089707 (+) 780 WP_000201141.1 ribonuclease HII -
  EL271_RS05870 (SPOH_1074) - 1089723..1091273 (+) 1551 WP_000392557.1 ClC family H(+)/Cl(-) exchange transporter -
  EL271_RS05875 (SPOH_1075) xerS 1091857..1092927 (+) 1071 WP_000817890.1 tyrosine recombinase XerS Machinery gene
  EL271_RS05880 (SPOH_1076) - 1092992..1093981 (-) 990 WP_000873993.1 lipoate--protein ligase -
  EL271_RS05885 (SPOH_1077) lpdA 1094045..1095748 (-) 1704 WP_126418329.1 dihydrolipoyl dehydrogenase -
  EL271_RS05890 (SPOH_1078) - 1095794..1096837 (-) 1044 WP_000752696.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41143.24 Da        Isoelectric Point: 9.7561

>NTDB_id=61104 EL271_RS05875 WP_000817890.1 1091857..1092927(+) (xerS) [Streptococcus pneumoniae strain HU-OH]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLKSGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVSDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=61104 EL271_RS05875 WP_000817890.1 1091857..1092927(+) (xerS) [Streptococcus pneumoniae strain HU-OH]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTACCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGA
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAGGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCTAGCACACAAGTCACTGACCTCTATACCCATATTGTTAGTGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.438

100

0.994

Multiple sequence alignment