Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   LDJ84_RS20760 Genome accession   NZ_CP084413
Coordinates   4480511..4481656 (-) Length   381 a.a.
NCBI ID   WP_226045366.1    Uniprot ID   -
Organism   Pseudomonas sp. HS-18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4475511..4486656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDJ84_RS20750 (LDJ84_20750) - 4476353..4479238 (-) 2886 WP_226045365.1 FimV/HubP family polar landmark protein -
  LDJ84_RS20755 (LDJ84_20755) - 4479406..4480416 (-) 1011 WP_084357417.1 aspartate-semialdehyde dehydrogenase -
  LDJ84_RS20760 (LDJ84_20760) fimV 4480511..4481656 (-) 1146 WP_226045366.1 FimV family protein Machinery gene
  LDJ84_RS20765 (LDJ84_20765) asd 4481932..4483044 (-) 1113 WP_084357418.1 aspartate-semialdehyde dehydrogenase -
  LDJ84_RS20770 (LDJ84_20770) leuB 4483125..4484207 (-) 1083 WP_024766915.1 3-isopropylmalate dehydrogenase -
  LDJ84_RS20775 (LDJ84_20775) - 4484295..4485059 (-) 765 WP_226045367.1 class I SAM-dependent methyltransferase -
  LDJ84_RS20780 (LDJ84_20780) leuD 4485095..4485739 (-) 645 WP_024766913.1 3-isopropylmalate dehydratase small subunit -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 40805.93 Da        Isoelectric Point: 7.4070

>NTDB_id=610992 LDJ84_RS20760 WP_226045366.1 4480511..4481656(-) (fimV) [Pseudomonas sp. HS-18]
MWLATAVAAAFLPGMAGALELGDISSRAALGQNLSANIDLRGAADMSSEDVVVSLASAEDFERLGVDRNVVTSGLKFTPD
IGKNGRGVIHVSSNRPIREPYVNFVLQVVWPQGRLVREFTLLLDPPSYVASPVTPPAIAPVAAVRAPQAQPLTPSVANAP
TDSYRIQRNDALWDIASRNRPSGSVSVMQTMAAMQRMNPDAFVDGNINRLKVGQVLRLPSEQQVREQSHAQAVAHVETQN
SQWKAKRNPQLAQQERQLDATHKAEAGSAPAKAEERDNLRLVSGQPGKDKGKVEAEQLAVAQEGLDSARREGEELRSRIS
DLESQTQKLNKLIELKDSQIAGLIARLAEQDRAKAQAASPAGNPQASAGLTAQAAGGEPRP

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=610992 LDJ84_RS20760 WP_226045366.1 4480511..4481656(-) (fimV) [Pseudomonas sp. HS-18]
TTGTGGTTGGCAACGGCGGTGGCGGCGGCTTTCCTGCCGGGCATGGCGGGCGCCCTTGAGCTGGGCGACATTTCCTCGCG
GGCGGCGCTGGGGCAGAACCTTTCGGCCAATATCGATCTGCGCGGTGCGGCTGACATGAGCTCCGAAGACGTCGTGGTGA
GCCTGGCCTCGGCCGAGGACTTCGAGCGCCTCGGGGTGGACCGCAACGTGGTCACCAGCGGGCTGAAATTCACCCCTGAT
ATCGGCAAGAACGGCCGTGGCGTCATTCATGTCAGCTCGAACAGGCCGATTCGCGAGCCGTACGTGAACTTTGTCCTGCA
GGTCGTCTGGCCGCAGGGGCGCCTGGTTCGTGAGTTCACCCTGTTGCTGGATCCGCCGTCCTATGTAGCCAGCCCCGTGA
CGCCGCCGGCCATTGCGCCGGTTGCTGCCGTCCGCGCGCCGCAAGCGCAACCGTTGACGCCTTCTGTGGCCAATGCGCCG
ACTGACAGCTATCGCATCCAGCGCAACGACGCGCTGTGGGACATCGCCTCGCGCAATCGCCCATCCGGAAGCGTCTCGGT
CATGCAGACCATGGCGGCGATGCAGCGGATGAACCCCGATGCCTTCGTCGACGGCAATATCAATCGCCTGAAGGTCGGCC
AGGTACTGCGTCTGCCCAGCGAGCAACAGGTTCGCGAGCAGAGCCATGCCCAGGCAGTGGCCCACGTGGAAACCCAGAAT
TCGCAGTGGAAGGCCAAGCGCAATCCGCAACTGGCGCAGCAGGAGCGCCAACTGGACGCGACCCACAAGGCCGAGGCGGG
CAGTGCGCCGGCGAAGGCCGAAGAGCGCGACAACCTGCGCCTGGTCTCCGGTCAGCCGGGTAAAGATAAAGGCAAGGTGG
AGGCCGAGCAGTTGGCCGTTGCCCAGGAAGGCCTGGACAGCGCACGCCGCGAAGGCGAGGAGCTGCGCAGCCGGATTTCC
GACCTGGAAAGCCAGACCCAGAAGTTGAACAAGCTGATCGAGCTGAAAGACTCGCAGATCGCCGGCCTGATCGCGCGACT
GGCCGAGCAGGATCGCGCCAAGGCCCAGGCCGCCTCGCCAGCCGGCAATCCCCAGGCATCGGCAGGGTTGACCGCTCAGG
CCGCCGGGGGCGAGCCGCGCCCCTGA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(164-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

49.593

96.85

0.48