Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LDJ84_RS20190 Genome accession   NZ_CP084413
Coordinates   4350979..4353189 (-) Length   736 a.a.
NCBI ID   WP_226046608.1    Uniprot ID   -
Organism   Pseudomonas sp. HS-18     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4345979..4358189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDJ84_RS20155 (LDJ84_20155) murB 4346335..4347354 (-) 1020 WP_170858385.1 UDP-N-acetylmuramate dehydrogenase -
  LDJ84_RS20160 (LDJ84_20160) - 4347351..4347815 (-) 465 WP_170858384.1 low molecular weight protein-tyrosine-phosphatase -
  LDJ84_RS20165 (LDJ84_20165) kdsB 4347815..4348579 (-) 765 WP_065084902.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LDJ84_RS20170 (LDJ84_20170) - 4348584..4348769 (-) 186 WP_009621404.1 Trm112 family protein -
  LDJ84_RS20175 (LDJ84_20175) lpxK 4348828..4349826 (-) 999 WP_226045332.1 tetraacyldisaccharide 4'-kinase -
  LDJ84_RS20180 (LDJ84_20180) - 4349826..4350275 (-) 450 WP_024766674.1 ExbD/TolR family protein -
  LDJ84_RS20185 (LDJ84_20185) exbB 4350272..4350907 (-) 636 WP_024766675.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LDJ84_RS20190 (LDJ84_20190) comA 4350979..4353189 (-) 2211 WP_226046608.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LDJ84_RS20195 (LDJ84_20195) - 4353352..4353882 (+) 531 WP_065084899.1 DUF2062 domain-containing protein -
  LDJ84_RS20200 (LDJ84_20200) - 4354030..4355277 (-) 1248 WP_226045333.1 lipoprotein-releasing ABC transporter permease subunit -
  LDJ84_RS20205 (LDJ84_20205) lolD 4355289..4355978 (-) 690 WP_024766679.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  LDJ84_RS20210 (LDJ84_20210) - 4355971..4357224 (-) 1254 WP_226045334.1 lipoprotein-releasing ABC transporter permease subunit -
  LDJ84_RS20215 (LDJ84_20215) - 4357349..4357924 (+) 576 WP_024766681.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 79405.85 Da        Isoelectric Point: 8.5008

>NTDB_id=610991 LDJ84_RS20190 WP_226046608.1 4350979..4353189(-) (comA) [Pseudomonas sp. HS-18]
MFALALGLLALRWLPALPSGWVLLLLALCALPLLFTRGYFVGLFLLGFAWACQSAQWALDDRLAPELDGRTLWLEGRVEG
LPDRSGPSVRFVLSEVSSPRAQVPATLRLSWFGGPPVEGGERWRLAVKLKRPHGMVNGVGFDYEAWLTAQRIGATGSVKD
GQRLEASSGPRVWREAWRQRLLAVDAQGRSGALAALVLGDASGLTTADWQVLQDTGTLHLMVISGSHISLLAGLLYAVVA
GLARLGCWPSRLPWLPCACLLAASGAWAYSLMAGFEVPLQRACVMVSIVLLWRLRYRHRGLWTPLLGALLAVLVAEPLVV
LLPGFWLSYAAVALLIFGFSGRLGRWTAWRTWLRAQWLMAIGLLPASIALGLPLSISGVAANLIAVPWVELVVVPLALLG
SLALGVPGVGELLLWVSGGLLEILFRLLGWMAELAPAWQPVAAPTWTLILAMLGALLLLAPAGVPLRSLGLVMFLPVFWP
SIPLPAPGMAEIRVLDVGQGLSVLIRTRSQSWLYDTGARNGDFDIGERVVVPTLRSLGVGKLNLLMLSHADNDHAGGALA
VKHSLRPAQVISGEPERLAPELQASPCRIEEWRVDGVRLSSWTWAGARESNDRSCALEVEANGERILLTGDLPQSAELAW
LAAHPAERIDWLLAGHHGSRSSSGPAFLRAIRPSTAIISRGANNPYGHPHPSVVERFRTLGIRIQDTAEEGALVLTLGAH
GELGGVREGAHFWQEN

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=610991 LDJ84_RS20190 WP_226046608.1 4350979..4353189(-) (comA) [Pseudomonas sp. HS-18]
ATGTTCGCTCTGGCCCTGGGACTGCTGGCGCTGCGCTGGCTGCCGGCGCTGCCATCTGGTTGGGTGCTGCTGCTTCTCGC
ACTGTGCGCTTTGCCTCTGTTGTTCACTCGCGGCTACTTCGTCGGGCTGTTCCTGCTCGGCTTCGCCTGGGCCTGCCAAT
CGGCCCAGTGGGCGCTGGATGACCGGCTGGCGCCGGAGCTGGACGGCCGCACGCTGTGGCTGGAGGGCAGGGTAGAGGGC
TTGCCGGATCGTTCGGGGCCTTCAGTGCGCTTCGTGCTCTCCGAGGTTTCCAGCCCGCGCGCGCAGGTTCCGGCAACACT
GCGCCTGTCCTGGTTCGGCGGGCCGCCGGTAGAAGGTGGCGAGCGCTGGCGGTTGGCAGTGAAGCTCAAGCGTCCCCACG
GCATGGTCAACGGCGTGGGCTTCGATTACGAGGCCTGGCTCACTGCCCAGCGCATCGGCGCCACCGGCAGCGTGAAGGAC
GGGCAGCGCCTGGAGGCTTCCAGCGGCCCGCGCGTCTGGCGCGAAGCCTGGAGGCAACGCCTGCTGGCAGTGGACGCCCA
GGGGCGCTCTGGTGCGCTTGCCGCGCTGGTGCTGGGCGACGCTTCCGGGTTGACCACGGCGGACTGGCAGGTCCTGCAGG
ACACCGGAACCCTGCACCTGATGGTGATTTCCGGCTCACACATTTCCCTGCTGGCGGGCCTGCTCTACGCCGTCGTGGCG
GGGCTGGCGCGCCTGGGCTGCTGGCCATCCCGTCTGCCCTGGTTGCCCTGCGCCTGCCTGCTGGCTGCCAGCGGTGCCTG
GGCCTACAGCCTGATGGCGGGCTTCGAGGTGCCGTTGCAGCGCGCGTGCGTGATGGTCTCCATCGTCCTGCTGTGGCGTT
TGCGCTATCGCCATCGGGGATTGTGGACGCCGCTGCTGGGCGCTTTGCTAGCCGTGCTGGTGGCTGAGCCCTTGGTGGTG
TTGCTGCCGGGGTTCTGGTTGTCCTACGCGGCGGTGGCTTTGCTGATCTTCGGCTTCTCCGGCCGCCTGGGGCGCTGGAC
GGCCTGGCGCACCTGGCTGCGTGCGCAGTGGCTGATGGCGATCGGGTTGTTGCCGGCGTCCATCGCGCTGGGCCTGCCGC
TGAGCATTTCCGGTGTCGCCGCCAACCTGATTGCGGTGCCCTGGGTGGAGCTGGTCGTGGTTCCGCTCGCTCTGTTGGGC
AGTCTGGCGCTGGGGGTTCCCGGCGTGGGGGAGTTGCTGCTCTGGGTGTCCGGCGGCCTGCTGGAAATACTGTTTCGTCT
GCTCGGATGGATGGCCGAGCTGGCGCCCGCCTGGCAGCCGGTGGCGGCGCCAACCTGGACGCTGATACTGGCGATGCTCG
GTGCGCTCCTGCTGCTGGCGCCGGCGGGAGTACCGCTGCGCTCGCTCGGGCTGGTGATGTTCCTGCCGGTGTTCTGGCCG
AGCATTCCGCTGCCCGCGCCGGGCATGGCCGAGATCCGCGTACTGGACGTGGGGCAGGGGCTTTCGGTGCTGATCCGTAC
CCGCAGTCAGAGCTGGCTCTACGACACTGGTGCGCGCAACGGAGATTTCGATATCGGCGAGCGGGTGGTGGTGCCGACCT
TGCGGAGTCTTGGCGTCGGCAAGCTCAATCTGCTGATGCTCAGCCATGCGGACAATGACCATGCCGGCGGTGCGTTGGCG
GTGAAGCATTCACTCCGGCCTGCGCAGGTTATCAGTGGCGAGCCGGAAAGACTGGCGCCAGAGTTGCAGGCAAGCCCCTG
TCGAATCGAGGAATGGAGGGTTGATGGCGTACGCCTGTCCAGCTGGACGTGGGCAGGCGCCAGGGAAAGCAACGACCGCT
CGTGCGCGCTGGAAGTCGAGGCCAATGGCGAGCGCATCCTGCTCACTGGCGACCTGCCACAATCTGCCGAACTGGCCTGG
CTGGCGGCGCATCCGGCCGAGCGCATCGATTGGTTGCTGGCCGGGCACCACGGCAGCCGTAGTTCCTCCGGGCCGGCCTT
CCTGCGGGCGATCCGTCCATCCACCGCGATCATCTCGCGCGGTGCCAATAACCCCTACGGCCATCCGCACCCGTCGGTCG
TCGAGCGCTTCCGTACGCTGGGCATACGGATTCAGGATACGGCGGAGGAGGGCGCGCTAGTCCTGACCCTAGGTGCCCAT
GGCGAGCTTGGGGGAGTGCGGGAAGGCGCACATTTCTGGCAGGAAAATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(196-459)

Domain of unknown function (DUF4131) (DUF4131)

(16-163)

Metallo-beta-lactamase superfamily (Lactamase_B)

(496-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

57.382

97.554

0.56