Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   BASU_RS05920 Genome accession   NC_022081
Coordinates   1097615..1097806 (+) Length   63 a.a.
NCBI ID   WP_007409124.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5113     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1092615..1102806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BASU_RS05885 (BASU_1064) argF 1093467..1094438 (+) 972 WP_007409130.1 ornithine carbamoyltransferase -
  BASU_RS05890 (BASU_1065) - 1094514..1094693 (+) 180 WP_003155070.1 YjzC family protein -
  BASU_RS05895 (BASU_1066) - 1094730..1094915 (-) 186 WP_007409129.1 YjzD family protein -
  BASU_RS05905 (BASU_1067) - 1095176..1095910 (+) 735 WP_007409127.1 hypothetical protein -
  BASU_RS05910 (BASU_1068) - 1095993..1096559 (+) 567 WP_007409126.1 hypothetical protein -
  BASU_RS05915 (BASU_1069) med 1096649..1097602 (+) 954 WP_007409125.1 BMP family ABC transporter substrate-binding protein Regulator
  BASU_RS05920 (BASU_1070) comZ 1097615..1097806 (+) 192 WP_007409124.1 ComZ family protein Regulator
  BASU_RS05925 (BASU_1071) - 1097835..1098053 (-) 219 WP_007409123.1 hypothetical protein -
  BASU_RS05930 (BASU_1072) - 1098220..1099158 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  BASU_RS05935 (BASU_1073) fabF 1099181..1100419 (+) 1239 WP_020955629.1 beta-ketoacyl-ACP synthase II -
  BASU_RS05940 (BASU_1074) - 1100502..1101287 (+) 786 WP_020955630.1 DUF2268 domain-containing protein -
  BASU_RS05945 (BASU_1075) - 1101461..1102447 (+) 987 WP_007409119.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7185.30 Da        Isoelectric Point: 4.2259

>NTDB_id=61097 BASU_RS05920 WP_007409124.1 1097615..1097806(+) (comZ) [Bacillus velezensis UCMB5113]
MQHEKSLEFMQIAMKYLPEAKAELEKSGIDLSLEMIQPFMDLFTSVMAEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=61097 BASU_RS05920 WP_007409124.1 1097615..1097806(+) (comZ) [Bacillus velezensis UCMB5113]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCGATGAAATACCTGCCGGAAGCAAAGGCGGAGCTTGAGAAATC
CGGCATAGATCTGTCTTTGGAAATGATTCAGCCGTTTATGGACCTGTTTACATCGGTCATGGCGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

84.483

92.063

0.778

Multiple sequence alignment