Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NON14_RS01640 Genome accession   NZ_CP101642
Coordinates   334846..336645 (-) Length   599 a.a.
NCBI ID   WP_409043709.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HRB10     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 329846..341645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NON14_RS01615 (NON14_01615) - 330099..331640 (+) 1542 WP_056947324.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  NON14_RS01620 (NON14_01620) - 331661..332284 (+) 624 WP_143457233.1 hypothetical protein -
  NON14_RS01625 (NON14_01625) - 332434..333321 (+) 888 WP_056947329.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  NON14_RS01630 (NON14_01630) - 333318..333998 (+) 681 WP_056947332.1 metal ABC transporter ATP-binding protein -
  NON14_RS01635 (NON14_01635) - 334033..334809 (+) 777 WP_011373994.1 metal ABC transporter permease -
  NON14_RS01640 (NON14_01640) pepF 334846..336645 (-) 1800 WP_409043709.1 oligoendopeptidase F Regulator
  NON14_RS01645 (NON14_01645) - 336844..338031 (+) 1188 WP_056947338.1 LCP family protein -
  NON14_RS01650 (NON14_01650) - 338176..339411 (+) 1236 WP_056947341.1 NupC/NupG family nucleoside CNT transporter -
  NON14_RS01660 (NON14_01660) - 339715..340446 (+) 732 WP_056947344.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67659.45 Da        Isoelectric Point: 4.4716

>NTDB_id=610941 NON14_RS01640 WP_409043709.1 334846..336645(-) (pepF) [Latilactobacillus sakei strain HRB10]
MHKLPTRSEVPENLTWDLSTIFKSDSDFEVAVATLKQALPALEQYNQPFKTADQLVTTIEQVLTLFRQLETVYVYASMKN
DQDTANTTYQGYQAQVDALAADVSAAAAFLEPAILEIPVDQLTDWQTNEPALKSYQHFIQTITDSREHVLSGQEEALIAA
AGDIFGAASQTFSVLDNSDIQFPDVVDETGQTHQLSNGLYSQLLQSTDRQVRQDVFEALYSTYDQFKNTFATTLATEIKG
HNYLAQVHHYDSARQAALAPKAIPESVYTTLVDQVNQHLPLLHRYVKLRQKQLALPQLHMYDLYTPLLGKPALSYTYPQA
QTTAREALAVLGPEYTPIVDQIFDQRQIDVVENKGKRSGAYSGGAYDTNPFILLNWQDDLNNLYTLVHETGHSVHSYLTR
HNQPYVYGDYPIFVAEIASTTNENLLTEYLLKTQKDPKVQAYLLNYYLDGFKGTVFRQTQFAEFEHYIHDAAANGTPLTA
DFMSTYYADLNARYYGDAVAKDPQIALEWARIPHFYMNYYVYQYATGFAAATTLADQITTNQPGALDNYLTYLKNGSASY
PIETMQKAGVDMTNADYLERAFDVFEQRLDQLEALLADM

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=610941 NON14_RS01640 WP_409043709.1 334846..336645(-) (pepF) [Latilactobacillus sakei strain HRB10]
ATTCACAAATTACCCACACGCTCTGAAGTCCCTGAAAACTTAACCTGGGACCTCAGTACCATTTTCAAAAGCGACTCAGA
TTTCGAAGTAGCTGTCGCAACGCTCAAACAGGCACTACCAGCACTTGAACAATACAACCAACCGTTTAAAACGGCTGATC
AACTCGTAACAACGATTGAACAAGTGCTAACGCTCTTTAGACAGTTAGAAACGGTCTACGTTTACGCTAGCATGAAAAAC
GATCAAGATACAGCTAATACCACTTATCAAGGTTATCAAGCTCAGGTCGATGCTTTAGCAGCTGACGTTTCAGCGGCGGC
CGCCTTTTTAGAACCCGCTATCCTCGAAATTCCCGTTGACCAATTAACTGACTGGCAGACCAATGAGCCAGCACTTAAAA
GTTATCAACATTTTATCCAGACTATCACTGATAGCCGCGAACATGTCTTATCAGGTCAAGAAGAAGCCCTAATTGCCGCT
GCTGGCGATATCTTTGGTGCTGCTAGCCAAACCTTCAGTGTTTTGGATAACTCAGATATTCAATTCCCAGACGTTGTCGA
TGAAACCGGCCAAACGCATCAATTATCAAACGGCCTCTATAGCCAATTGTTACAATCAACCGATCGCCAGGTCCGCCAAG
ACGTCTTTGAAGCACTCTACAGCACTTATGATCAGTTCAAAAATACATTTGCGACAACCCTTGCGACTGAGATCAAAGGG
CACAACTACCTTGCTCAAGTCCATCACTACGACAGTGCGCGCCAAGCAGCCCTCGCACCTAAAGCCATTCCTGAATCAGT
CTACACGACCTTAGTCGACCAAGTGAACCAACATTTGCCATTATTACATCGTTATGTTAAATTACGTCAAAAGCAATTAG
CATTACCGCAATTGCATATGTACGACTTATACACACCACTTTTAGGCAAACCCGCTTTGAGCTACACTTATCCACAAGCA
CAAACAACAGCGCGCGAAGCATTAGCCGTCTTAGGGCCTGAATACACCCCAATTGTGGACCAAATCTTCGATCAACGGCA
AATTGATGTCGTTGAAAACAAAGGCAAGCGCAGCGGCGCTTACTCTGGTGGTGCTTACGATACCAATCCGTTCATTCTCT
TGAATTGGCAAGACGATCTTAACAACTTATACACACTGGTCCACGAAACTGGCCACAGTGTCCACAGTTATTTAACACGT
CACAATCAACCTTACGTTTATGGCGATTATCCAATCTTCGTCGCTGAAATTGCGTCCACAACGAATGAAAACCTGCTTAC
TGAATATCTTTTGAAGACCCAAAAAGATCCCAAAGTTCAAGCCTACTTGTTGAACTACTACCTTGATGGTTTCAAAGGGA
CTGTCTTCCGTCAAACACAATTTGCCGAATTCGAACACTATATTCACGATGCAGCAGCCAATGGAACCCCTCTAACGGCT
GACTTCATGTCAACTTACTACGCTGACTTAAACGCTCGCTATTATGGCGATGCGGTCGCCAAGGATCCTCAAATCGCCTT
AGAATGGGCTCGGATTCCCCATTTTTACATGAACTATTACGTTTATCAATATGCAACTGGCTTTGCCGCTGCGACGACGC
TCGCTGATCAAATCACCACGAACCAACCGGGTGCACTCGACAATTATCTGACCTACCTCAAAAACGGGAGTGCCAGTTAC
CCAATTGAAACAATGCAAAAAGCCGGTGTGGATATGACGAACGCCGATTATCTTGAACGCGCCTTTGATGTTTTTGAACA
ACGCCTCGATCAATTAGAAGCATTACTTGCTGATATGTAA

Domains

Predicted by InterProScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.992

98.664

0.543