Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   NON14_RS00670 Genome accession   NZ_CP101642
Coordinates   132283..134574 (+) Length   763 a.a.
NCBI ID   WP_011373848.1    Uniprot ID   Q38ZE3
Organism   Latilactobacillus sakei strain HRB10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 127283..139574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NON14_RS00645 (NON14_00655) - 127663..128121 (+) 459 WP_011373843.1 MarR family transcriptional regulator -
  NON14_RS00650 (NON14_00660) - 128487..129389 (-) 903 WP_011373844.1 proline-specific peptidase family protein -
  NON14_RS00655 (NON14_00665) - 129463..131301 (-) 1839 WP_076632046.1 cation:proton antiporter family protein -
  NON14_RS00660 (NON14_00670) crcB 131438..131845 (+) 408 WP_035146059.1 fluoride efflux transporter CrcB -
  NON14_RS00665 (NON14_00675) - 131842..132189 (+) 348 WP_056948605.1 CrcB family protein -
  NON14_RS00670 (NON14_00680) helD 132283..134574 (+) 2292 WP_011373848.1 RNA polymerase recycling motor HelD Machinery gene
  NON14_RS00675 (NON14_00685) coaA 134682..135611 (+) 930 WP_016264412.1 type I pantothenate kinase -
  NON14_RS00680 (NON14_00690) guaA 135778..137331 (+) 1554 WP_096585690.1 glutamine-hydrolyzing GMP synthase -
  NON14_RS00685 (NON14_00695) - 137472..138839 (+) 1368 WP_409043495.1 hypothetical protein -

Sequence

Protein


Download         Length: 763 a.a.        Molecular weight: 87744.69 Da        Isoelectric Point: 6.2654

>NTDB_id=610934 NON14_RS00670 WP_011373848.1 132283..134574(+) (helD) [Latilactobacillus sakei strain HRB10]
MTDVQKSLEQSRLTEIIGLIKKAETHFEGAVKRAKSEEKEINENFFNDVRLNFNNDSAMTETAVSIEQQRQMLQERNHSW
QQSSRQLETLQKMEKTPYFARVDFQEKGEPKSESIYIGLGSFTDTDDHFLIYDWRAPISSIYYEGKTGAVTYQTPDGPQD
VNISLKRQFLIEDGQIKALFDTQETIGDQMLLEVLGEKSDTQMKSIVTTIQREQNQIIRNTDADLLFVQGAAGSGKTSAI
LQRIAFLLYRYRGNLDSSQVIMFSPNQLFNDYIADVLPELGEQNMIQMTYFQYVARRLPNMAVQSLFDQFETPVNETDGR
ISRLKESLVFYKAVKKYAAHLEKADMRFRDMKVKGRVLITKEHISEVYYRFNENYHLGNRLDATKESLLRTLSHKVDHET
KADWVTEQAENMSDEEIRELMSGKDFKTGDAESKFIAKQIVLEAFKPVRRSIQRNRFLSIQAQYIHFLRVVPQLVKLADF
DITEEQWQDHVTHFVAQLKAKQMTLQDVTPYLHLYDLMTGKKGERDMRFVFIDEIQDYTPYELAFLKLHFPKARFTLLGD
LNQAIFTKGNSTNLLQQVQQLFDAQNTKVVQLTRSYRSTQQVTDFTKGLLKGGQAIEAFNRVGDKPNLIVRQSEAELVAD
VNRQLAANEADELSTAIITKTLVQAQELTKMLKETGTKVTLIRSENQRLAAGTLVVPSFLAKGLEFDAIIGWQISAANYN
HEDQRQLLYTICSRAMHRLTLLATDALSPLIDNVDPEKYTLTK

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=610934 NON14_RS00670 WP_011373848.1 132283..134574(+) (helD) [Latilactobacillus sakei strain HRB10]
TTGACTGACGTACAGAAATCATTGGAACAAAGCCGATTAACAGAAATTATTGGTTTAATTAAAAAAGCTGAGACCCATTT
TGAAGGGGCTGTTAAGCGCGCAAAATCGGAAGAAAAAGAAATTAACGAGAACTTCTTCAACGACGTTCGCCTTAACTTCA
ATAACGATTCCGCGATGACTGAAACCGCCGTTTCGATTGAACAGCAGCGGCAAATGCTACAAGAACGCAATCACTCGTGG
CAACAATCTTCACGGCAATTGGAAACCTTGCAAAAGATGGAAAAGACGCCATACTTTGCCCGTGTTGATTTTCAAGAAAA
GGGTGAACCTAAATCCGAATCAATTTATATCGGGTTAGGCTCATTTACAGATACCGACGATCATTTCTTAATTTATGATT
GGCGGGCACCAATTTCATCAATTTACTATGAAGGTAAGACGGGCGCTGTGACGTACCAAACACCAGACGGTCCGCAAGAT
GTGAATATCTCACTTAAGCGTCAATTTTTGATTGAAGATGGCCAAATTAAGGCCTTATTTGATACGCAAGAAACGATTGG
CGATCAAATGTTATTAGAAGTGTTAGGTGAAAAATCTGATACACAGATGAAGAGTATCGTGACGACGATTCAACGTGAAC
AAAATCAGATTATCCGTAATACCGATGCTGATTTGTTATTCGTTCAAGGGGCAGCTGGCTCAGGGAAAACGTCAGCTATC
TTGCAACGCATTGCGTTTTTACTCTATCGCTATCGGGGGAATTTAGATTCGAGCCAAGTGATCATGTTCTCGCCTAACCA
ATTATTCAACGACTACATCGCAGATGTGTTGCCTGAATTGGGCGAACAAAATATGATTCAAATGACTTACTTCCAATATG
TGGCACGCCGGTTACCAAACATGGCGGTCCAGAGCCTCTTTGATCAATTCGAAACACCAGTTAACGAAACCGATGGCCGG
ATTAGTCGCTTGAAAGAAAGTCTCGTCTTTTATAAGGCTGTTAAAAAGTACGCTGCACATCTTGAAAAAGCCGACATGCG
CTTCCGCGATATGAAGGTCAAGGGCCGCGTCTTAATTACTAAGGAACACATCAGCGAGGTTTATTACCGGTTTAATGAAA
ACTACCATCTCGGCAATCGATTAGATGCCACTAAAGAAAGTTTGTTGCGGACATTGAGCCACAAGGTTGATCACGAAACC
AAGGCCGACTGGGTGACTGAACAAGCCGAGAATATGAGTGATGAAGAAATTCGCGAATTGATGTCTGGTAAAGATTTCAA
GACGGGCGATGCTGAAAGCAAGTTTATTGCTAAGCAGATCGTGCTAGAAGCGTTCAAACCCGTTCGCCGGTCTATTCAAC
GCAATCGCTTCTTAAGCATCCAGGCGCAATATATTCACTTCTTACGGGTTGTGCCACAACTTGTGAAGTTAGCCGATTTT
GATATTACAGAAGAGCAATGGCAAGACCACGTCACGCATTTTGTCGCACAATTGAAGGCTAAGCAGATGACGTTGCAAGA
TGTCACACCTTATCTTCACCTCTACGATTTGATGACGGGTAAAAAAGGTGAACGTGATATGCGTTTTGTCTTCATCGATG
AAATTCAAGATTACACGCCTTATGAATTGGCCTTCTTGAAGCTCCACTTCCCTAAGGCGCGCTTCACATTATTGGGCGAT
TTGAACCAAGCGATTTTCACTAAGGGTAACAGCACAAATCTCTTGCAACAAGTGCAACAATTATTTGATGCCCAAAATAC
AAAAGTGGTGCAATTAACGCGTTCATATCGGTCAACGCAACAAGTGACCGACTTTACCAAGGGCTTATTAAAAGGTGGCC
AAGCCATCGAAGCCTTCAACCGAGTTGGCGATAAACCAAACTTGATTGTGCGCCAATCAGAAGCTGAGTTAGTGGCTGAT
GTTAACCGCCAATTAGCCGCAAATGAAGCGGATGAATTATCGACGGCGATTATTACCAAGACATTGGTGCAAGCCCAAGA
ATTGACGAAGATGCTCAAGGAAACGGGAACCAAAGTCACCTTGATTCGTTCCGAAAACCAACGTTTAGCAGCCGGGACAT
TAGTGGTCCCAAGTTTCTTAGCTAAAGGTTTGGAATTCGATGCCATTATTGGCTGGCAAATCAGTGCCGCCAACTACAAT
CATGAAGATCAACGGCAATTGCTCTACACGATTTGTTCAAGAGCAATGCATCGCTTGACCTTGTTAGCCACTGACGCACT
CTCACCACTGATTGATAACGTCGATCCAGAAAAATATACATTAACAAAATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(700-741)

AAA domain (AAA_19)

(214-566)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38ZE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

38.243

100

0.388