Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BASU_RS05560 Genome accession   NC_022081
Coordinates   1027775..1028353 (+) Length   192 a.a.
NCBI ID   WP_020955599.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5113     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1022775..1033353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BASU_RS05540 (BASU_0995) - 1023276..1024568 (-) 1293 WP_007409192.1 globin-coupled sensor protein -
  BASU_RS05545 (BASU_0996) - 1024691..1026214 (-) 1524 WP_007409191.1 FAD-dependent oxidoreductase -
  BASU_RS05550 (BASU_0997) - 1026339..1027196 (+) 858 WP_007409190.1 SDR family oxidoreductase -
  BASU_RS05555 (BASU_0998) - 1027226..1027459 (-) 234 WP_007409189.1 IDEAL domain-containing protein -
  BASU_RS05560 (BASU_0999) comK 1027775..1028353 (+) 579 WP_020955599.1 competence protein ComK Regulator
  BASU_RS05565 (BASU_1000) - 1028499..1028867 (+) 369 WP_020955600.1 DUF1801 domain-containing protein -
  BASU_RS05570 (BASU_1001) - 1028894..1029265 (+) 372 WP_032866165.1 iron chaperone -
  BASU_RS05575 (BASU_1002) - 1029313..1030524 (-) 1212 WP_007409185.1 GNAT family N-acetyltransferase -
  BASU_RS05580 (BASU_1003) - 1030681..1031391 (-) 711 WP_020955602.1 YrpD family protein -
  BASU_RS05585 (BASU_1004) - 1031587..1031856 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  BASU_RS05590 (BASU_1005) - 1031889..1032206 (-) 318 WP_003155166.1 YbjQ family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22444.74 Da        Isoelectric Point: 8.1419

>NTDB_id=61093 BASU_RS05560 WP_020955599.1 1027775..1028353(+) (comK) [Bacillus velezensis UCMB5113]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELWERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=61093 BASU_RS05560 WP_020955599.1 1027775..1028353(+) (comK) [Bacillus velezensis UCMB5113]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCTGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGTGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

81.771

100

0.818

Multiple sequence alignment