Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LDX53_RS07465 Genome accession   NZ_CP084389
Coordinates   1569217..1571022 (+) Length   601 a.a.
NCBI ID   WP_046327613.1    Uniprot ID   A0AA47B3E0
Organism   Lactobacillus helsingborgensis strain IBH002     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1564217..1576022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDX53_RS07440 (LDX53_07460) - 1564575..1565051 (-) 477 WP_046327608.1 threonine/serine exporter family protein -
  LDX53_RS07445 (LDX53_07465) - 1565054..1565833 (-) 780 WP_046327609.1 threonine/serine exporter family protein -
  LDX53_RS07450 (LDX53_07470) - 1565843..1567390 (-) 1548 WP_046327610.1 ABC-F family ATP-binding cassette domain-containing protein -
  LDX53_RS07455 (LDX53_07475) - 1567497..1567856 (-) 360 WP_046327611.1 hypothetical protein -
  LDX53_RS07460 (LDX53_07480) - 1567886..1569067 (-) 1182 WP_046327612.1 LCP family protein -
  LDX53_RS07465 (LDX53_07485) pepF 1569217..1571022 (+) 1806 WP_046327613.1 oligoendopeptidase F Regulator
  LDX53_RS07470 (LDX53_07490) - 1571123..1572265 (-) 1143 WP_046327614.1 ArgE/DapE family deacylase -
  LDX53_RS07475 (LDX53_07495) - 1572279..1573028 (-) 750 WP_046327615.1 amino acid ABC transporter ATP-binding protein -
  LDX53_RS07480 (LDX53_07500) - 1573021..1574511 (-) 1491 WP_046327616.1 ABC transporter substrate-binding protein/permease -
  LDX53_RS07485 (LDX53_07505) - 1574673..1575902 (-) 1230 WP_046327617.1 lactate oxidase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68458.75 Da        Isoelectric Point: 4.9532

>NTDB_id=610922 LDX53_RS07465 WP_046327613.1 1569217..1571022(+) (pepF) [Lactobacillus helsingborgensis strain IBH002]
MTIPKRKDVPENLKWDLTRIFKSDEDWEDEYTRVKKEIPALSTIKDNFTTSGTSLYDGITQIFAVTRHLEKVYTYASLSS
DVDTKDAHYLGLVSQVQGLANQFDAATAFMAPAILSLSPEKLAAFKREEPRLADYNHLLEQITRMRPYTLSAQEEKLVAD
AGDAMSASENTYNVLTNSDMEFGYTQNDDGEMVQLSEGLYSLLIQSQNRTIRKEAFDVMYATYGQYQNSLAATLSGVVKK
HNYYARVHHYKSARDCAINENNVPAAVYDTLIAEVNKHIDLLHEYVALRKQILGLKDLQMWDIYVPLTGKPSLSYTFDAA
KAEAQKALKPLGADYLKQVDYIFNNRVIDVVESKNKVTGAYSGGCYDTDAYELLNWEDNIDSLYTLVHETGHSVHSMYTR
QNQPYVYGNYPIFVAEIASTTNENILTEYFLAHVKDPKTRAFVLNYYLDSFKGTLFRQAQFAEFEQKIHEMDAQGEPLTA
DRLNKCYGELNQRYYGDCVEPGGEIAKEWTRIPHFYYNFYVYQYATGFAAATALANNVVHGTEEQTTAYVNFLKSGSSDY
PVEIMKKAGVDMTQPEYLEEAFATFAKRLAEFKQIVQNNFN

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=610922 LDX53_RS07465 WP_046327613.1 1569217..1571022(+) (pepF) [Lactobacillus helsingborgensis strain IBH002]
ATGACAATTCCTAAAAGAAAAGACGTCCCTGAAAATCTTAAATGGGACTTAACCAGAATATTCAAATCTGATGAAGACTG
GGAAGATGAATATACACGTGTTAAAAAAGAAATACCAGCTTTAAGCACTATCAAAGACAATTTTACTACTTCGGGAACCT
CCTTATATGACGGGATTACGCAAATATTTGCAGTTACTCGCCACTTGGAAAAAGTTTATACTTATGCCAGTTTGTCCAGT
GATGTCGATACCAAAGATGCCCACTATTTGGGTTTAGTTTCTCAAGTACAAGGACTAGCCAATCAATTTGATGCCGCTAC
CGCTTTTATGGCTCCTGCAATTTTAAGCCTTTCCCCTGAGAAATTAGCCGCCTTTAAACGCGAAGAACCAAGACTAGCTG
ATTACAATCATTTATTGGAGCAGATTACCAGAATGCGACCATATACTTTGTCTGCTCAAGAAGAAAAATTAGTTGCCGAT
GCTGGAGATGCAATGTCTGCTTCTGAAAATACCTATAATGTGCTGACTAATTCGGACATGGAATTTGGTTATACGCAAAA
TGATGACGGCGAAATGGTGCAATTATCGGAAGGATTATATTCCTTACTAATCCAATCGCAAAACAGAACTATCCGCAAGG
AAGCTTTTGATGTCATGTATGCCACATACGGTCAATACCAAAACTCATTGGCGGCCACTCTTTCTGGAGTAGTCAAAAAG
CATAACTATTATGCGCGCGTTCATCATTATAAGTCAGCCCGCGATTGCGCGATCAATGAAAATAATGTACCGGCAGCCGT
TTACGATACCTTAATTGCAGAGGTAAACAAGCATATAGACTTACTACATGAATATGTGGCTCTGCGTAAACAAATTTTAG
GTTTAAAAGACCTGCAAATGTGGGACATCTATGTTCCTCTAACAGGCAAACCGTCTTTAAGCTATACATTTGACGCAGCC
AAAGCGGAAGCGCAAAAGGCTTTGAAACCACTTGGAGCAGATTATTTAAAGCAGGTAGACTATATTTTCAATAATCGGGT
AATTGATGTGGTTGAATCAAAAAATAAAGTTACAGGGGCTTATTCTGGTGGCTGTTATGATACGGACGCTTACGAACTCC
TTAACTGGGAGGATAATATTGATTCTCTGTATACTTTAGTACACGAAACGGGGCATTCAGTTCACAGTATGTATACGAGA
CAAAATCAGCCTTACGTTTATGGTAATTATCCTATATTTGTTGCCGAAATTGCCTCAACTACTAACGAAAACATCCTGAC
CGAATACTTTTTAGCCCATGTAAAAGATCCTAAAACACGTGCATTTGTTCTTAATTACTACTTGGACTCATTTAAAGGGA
CTTTATTCAGACAAGCTCAATTCGCCGAATTTGAACAAAAAATTCACGAAATGGATGCTCAGGGTGAGCCTTTAACTGCT
GACCGGCTAAATAAATGCTATGGTGAACTTAACCAGCGCTACTATGGCGATTGCGTTGAACCGGGTGGAGAAATTGCCAA
AGAGTGGACCAGAATTCCCCACTTTTACTACAATTTCTACGTCTACCAGTATGCTACAGGTTTTGCTGCAGCTACAGCTC
TAGCTAATAACGTTGTTCATGGCACCGAAGAACAAACAACAGCTTACGTTAACTTTTTAAAATCTGGTTCAAGTGACTAT
CCGGTTGAAATTATGAAAAAAGCAGGCGTCGACATGACTCAACCTGAATATTTGGAAGAAGCATTTGCAACTTTTGCCAA
ACGCTTAGCTGAATTTAAGCAAATTGTTCAAAATAATTTCAATTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.493

98.502

0.488